Wall clock time and date at job start Mon Mar 30 2020 02:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 C 1.52999 * 109.47366 * 120.00263 * 2 1 3 5 5 H 1.08995 * 109.46954 * 186.24906 * 4 2 1 6 6 C 1.53002 * 109.46532 * 306.24347 * 4 2 1 7 7 C 1.50690 * 109.47647 * 290.04146 * 6 4 2 8 8 H 1.08003 * 119.99979 * 359.97349 * 7 6 4 9 9 C 1.37878 * 120.00708 * 179.69282 * 7 6 4 10 10 N 1.31519 * 119.99341 * 0.27944 * 9 7 6 11 11 Si 1.86791 * 120.00531 * 180.27971 * 9 7 6 12 12 H 1.48502 * 109.47039 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47398 * 120.00431 * 11 9 7 14 14 H 1.48502 * 109.47311 * 240.00165 * 11 9 7 15 15 C 1.52995 * 109.47231 * 66.24063 * 4 2 1 16 16 C 1.53045 * 113.15138 * 165.10092 * 15 4 2 17 17 S 1.81431 * 89.89079 * 211.85645 * 16 15 4 18 18 C 1.53050 * 113.15048 * 64.72964 * 15 4 2 19 19 H 1.09001 * 109.47240 * 305.71550 * 1 2 3 20 20 H 1.09005 * 109.47622 * 65.71096 * 1 2 3 21 21 H 1.09001 * 109.47526 * 185.71390 * 1 2 3 22 22 H 1.09002 * 109.46618 * 240.00234 * 2 1 3 23 23 H 1.09001 * 109.46681 * 168.43572 * 3 2 1 24 24 H 1.08999 * 109.46947 * 288.42663 * 3 2 1 25 25 H 1.08990 * 109.47299 * 48.43197 * 3 2 1 26 26 H 1.09005 * 109.46761 * 170.04539 * 6 4 2 27 27 H 1.09004 * 109.47415 * 50.05347 * 6 4 2 28 28 H 0.97003 * 119.99591 * 179.97438 * 10 9 7 29 29 H 1.08998 * 112.50084 * 294.95280 * 15 4 2 30 30 H 1.08996 * 113.14801 * 327.11658 * 16 15 4 31 31 H 1.08998 * 113.14177 * 96.59834 * 16 15 4 32 32 H 1.08992 * 113.15089 * 263.40461 * 18 15 4 33 33 H 1.09003 * 113.14088 * 32.89053 * 18 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1242 -0.6254 1.3068 6 6 1.4059 -0.0963 2.4935 7 6 1.9691 1.2855 2.7042 8 1 2.7060 1.6785 2.0194 9 6 1.5394 2.0503 3.7679 10 7 0.6420 1.5718 4.6018 11 14 2.2317 3.7661 4.0245 12 1 3.2182 4.0668 2.9560 13 1 1.1281 4.7583 3.9721 14 1 2.8990 3.8376 5.3493 15 6 1.6622 -2.2019 1.1732 16 6 2.4254 -3.0699 2.1764 17 16 2.3710 -4.4590 1.0105 18 6 2.3468 -2.9392 0.0199 19 1 -0.3634 0.5999 0.8344 20 1 -0.3634 0.4227 -0.9367 21 1 -0.3634 -1.0225 0.1023 22 1 1.8932 -0.5138 -0.8900 23 1 3.1103 1.4495 0.2060 24 1 1.8548 1.8933 -0.9750 25 1 1.5182 2.0124 0.7688 26 1 1.6265 -0.7150 3.3634 27 1 0.3263 -0.0319 2.3578 28 1 0.3400 2.1097 5.3503 29 1 0.5840 -2.3592 1.2023 30 1 3.4366 -2.7124 2.3701 31 1 1.8661 -3.2577 3.0929 32 1 1.7218 -3.0175 -0.8696 33 1 3.3430 -2.5564 -0.2019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260649231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:18 Heat of formation + Delta-G solvation = -1.826480 kcal Electronic energy + Delta-G solvation = -13102.155409 eV Core-core repulsion = 11061.078828 eV Total energy + Delta-G solvation = -2041.076581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.36445 -34.47055 -32.47013 -28.95587 -26.79707 -25.95315 -25.36558 -21.79746 -20.68094 -18.18776 -16.46435 -15.99790 -15.35038 -14.37476 -14.23834 -13.64782 -13.29241 -12.65482 -12.41906 -12.08723 -11.92881 -11.60291 -11.28440 -11.14962 -10.82155 -10.74616 -10.67314 -10.41566 -10.25337 -10.11914 -9.67492 -9.44402 -8.89640 -8.67578 -8.30556 -7.57718 -5.99844 -3.97641 2.07668 2.24223 3.29373 3.38437 3.40605 4.44881 4.75443 5.07744 5.35254 5.36148 5.59898 5.66043 5.70530 5.76216 5.81337 5.98668 6.07305 6.31742 6.36931 6.42790 6.69061 6.73424 6.80197 6.86593 7.00349 7.15578 7.45446 7.71544 7.82649 8.02056 8.43735 9.06411 9.62798 11.11469 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.038536 B = 0.008856 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.419151 B = 3160.857271 C = 3526.940208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.149 4.149 4 C -0.067 4.067 5 H 0.061 0.939 6 C 0.025 3.975 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.055 3.945 10 N -0.895 5.895 11 Si 0.882 3.118 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.083 4.083 16 C -0.060 4.060 17 S -0.345 6.345 18 C -0.067 4.067 19 H 0.073 0.927 20 H 0.037 0.963 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.097 0.903 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -4.755 -7.734 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.206 4.206 4 C -0.087 4.087 5 H 0.080 0.920 6 C -0.012 4.012 7 C -0.554 4.554 8 H 0.089 0.911 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.710 3.290 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.102 4.102 16 C -0.208 4.208 17 S -0.119 6.119 18 C -0.215 4.215 19 H 0.092 0.908 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.115 0.885 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.774 -6.205 -7.669 10.023 hybrid contribution 0.434 1.947 0.353 2.025 sum 2.208 -4.259 -7.316 8.748 Atomic orbital electron populations 1.21927 0.96046 1.01072 1.01295 1.20860 0.95477 0.96493 0.96294 1.22283 1.01037 0.96749 1.00550 1.21356 0.99910 0.89534 0.97936 0.92044 1.19215 0.96487 0.95056 0.90427 1.21611 1.23337 1.00099 1.10353 0.91130 1.25005 0.95364 0.98020 0.96159 1.69977 1.30973 1.37059 1.15459 0.86688 0.78988 0.85202 0.78082 1.19698 1.21179 1.21224 1.22628 1.00337 0.96989 0.90285 1.24390 1.04571 0.90947 1.00858 1.88745 1.97992 1.14235 1.10931 1.24414 1.04432 0.91053 1.01630 0.90814 0.94437 0.93700 0.93719 0.93601 0.95753 0.88466 0.96798 0.95553 0.93236 0.87732 0.87920 0.88723 0.89255 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.38 37.16 0.31 -2.12 16 2 C -0.07 -1.22 2.62 -90.62 -0.24 -1.46 16 3 C -0.15 -2.69 7.54 37.16 0.28 -2.41 16 4 C -0.07 -1.20 1.43 -90.62 -0.13 -1.33 16 5 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 6 C 0.03 0.58 4.18 -27.89 -0.12 0.46 16 7 C -0.52 -13.06 6.70 -34.44 -0.23 -13.30 16 8 H 0.07 1.72 4.96 -52.48 -0.26 1.46 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 10 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 11 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C -0.08 -1.30 2.37 -90.57 -0.21 -1.51 16 16 C -0.06 -0.93 7.04 37.18 0.26 -0.67 16 17 S -0.35 -5.38 24.80 -107.50 -2.67 -8.04 16 18 C -0.07 -0.93 6.61 37.18 0.25 -0.69 16 19 H 0.07 1.42 6.41 -51.93 -0.33 1.09 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.04 0.69 6.54 -51.93 -0.34 0.35 16 22 H 0.04 0.67 7.38 -51.93 -0.38 0.29 16 23 H 0.04 0.82 7.30 -51.93 -0.38 0.44 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.10 2.03 5.52 -51.93 -0.29 1.74 16 26 H 0.01 0.34 7.72 -51.93 -0.40 -0.06 16 27 H 0.03 0.64 5.90 -51.93 -0.31 0.34 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.10 1.69 6.91 -51.93 -0.36 1.33 16 30 H 0.10 1.56 8.07 -51.93 -0.42 1.14 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -27.01 264.96 -8.01 -35.02 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.13 Total: -0.19 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 0.07 Total: -21.62 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.74 Total: -24.86 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.67 Total: -8.04 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.01 -8.01 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.194 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds