Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 C 1.52999 * 109.47366 * 120.00263 * 2 1 3 5 5 H 1.08995 * 109.46954 * 186.24906 * 4 2 1 6 6 C 1.53002 * 109.46532 * 306.24347 * 4 2 1 7 7 C 1.50690 * 109.47647 * 290.04146 * 6 4 2 8 8 H 1.08003 * 119.99979 * 359.97349 * 7 6 4 9 9 C 1.37878 * 120.00708 * 179.69282 * 7 6 4 10 10 N 1.31519 * 119.99341 * 0.27944 * 9 7 6 11 11 Si 1.86791 * 120.00531 * 180.27971 * 9 7 6 12 12 H 1.48502 * 109.47039 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47398 * 120.00431 * 11 9 7 14 14 H 1.48502 * 109.47311 * 240.00165 * 11 9 7 15 15 C 1.52995 * 109.47231 * 66.24063 * 4 2 1 16 16 C 1.53045 * 113.15138 * 165.10092 * 15 4 2 17 17 S 1.81431 * 89.89079 * 211.85645 * 16 15 4 18 18 C 1.53050 * 113.15048 * 64.72964 * 15 4 2 19 19 H 1.09001 * 109.47240 * 305.71550 * 1 2 3 20 20 H 1.09005 * 109.47622 * 65.71096 * 1 2 3 21 21 H 1.09001 * 109.47526 * 185.71390 * 1 2 3 22 22 H 1.09002 * 109.46618 * 240.00234 * 2 1 3 23 23 H 1.09001 * 109.46681 * 168.43572 * 3 2 1 24 24 H 1.08999 * 109.46947 * 288.42663 * 3 2 1 25 25 H 1.08990 * 109.47299 * 48.43197 * 3 2 1 26 26 H 1.09005 * 109.46761 * 170.04539 * 6 4 2 27 27 H 1.09004 * 109.47415 * 50.05347 * 6 4 2 28 28 H 0.97003 * 119.99591 * 179.97438 * 10 9 7 29 29 H 1.08998 * 112.50084 * 294.95280 * 15 4 2 30 30 H 1.08996 * 113.14801 * 327.11658 * 16 15 4 31 31 H 1.08998 * 113.14177 * 96.59834 * 16 15 4 32 32 H 1.08992 * 113.15089 * 263.40461 * 18 15 4 33 33 H 1.09003 * 113.14088 * 32.89053 * 18 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1242 -0.6254 1.3068 6 6 1.4059 -0.0963 2.4935 7 6 1.9691 1.2855 2.7042 8 1 2.7060 1.6785 2.0194 9 6 1.5394 2.0503 3.7679 10 7 0.6420 1.5718 4.6018 11 14 2.2317 3.7661 4.0245 12 1 3.2182 4.0668 2.9560 13 1 1.1281 4.7583 3.9721 14 1 2.8990 3.8376 5.3493 15 6 1.6622 -2.2019 1.1732 16 6 2.4254 -3.0699 2.1764 17 16 2.3710 -4.4590 1.0105 18 6 2.3468 -2.9392 0.0199 19 1 -0.3634 0.5999 0.8344 20 1 -0.3634 0.4227 -0.9367 21 1 -0.3634 -1.0225 0.1023 22 1 1.8932 -0.5138 -0.8900 23 1 3.1103 1.4495 0.2060 24 1 1.8548 1.8933 -0.9750 25 1 1.5182 2.0124 0.7688 26 1 1.6265 -0.7150 3.3634 27 1 0.3263 -0.0319 2.3578 28 1 0.3400 2.1097 5.3503 29 1 0.5840 -2.3592 1.2023 30 1 3.4366 -2.7124 2.3701 31 1 1.8661 -3.2577 3.0929 32 1 1.7218 -3.0175 -0.8696 33 1 3.3430 -2.5564 -0.2019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260649231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = -15.138527 kcal Electronic energy + Delta-G solvation = -13102.732662 eV Core-core repulsion = 11061.078828 eV Total energy + Delta-G solvation = -2041.653835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.78085 -35.89202 -34.37122 -30.67740 -28.27868 -27.17868 -27.00297 -23.60229 -21.98910 -19.62037 -18.32467 -17.40894 -16.74191 -16.20286 -15.64232 -15.04938 -14.77687 -14.01215 -13.81242 -13.68507 -13.47895 -13.01393 -12.94872 -12.73808 -12.49668 -12.44625 -12.08191 -11.95810 -11.78022 -11.53417 -11.17387 -11.04818 -10.49145 -10.41961 -10.27311 -8.80561 -8.05971 -6.07355 0.88327 1.03498 1.41764 1.45242 1.54550 2.48812 3.28920 3.50113 3.83379 4.08232 4.32688 4.38891 4.41983 4.48134 4.58445 4.71562 4.76108 4.97203 5.03983 5.06344 5.28221 5.28380 5.36318 5.40397 5.49694 5.64616 5.78801 5.91292 6.02532 6.07429 6.44582 7.06932 7.56034 9.06085 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.038536 B = 0.008856 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.419151 B = 3160.857271 C = 3526.940208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.055 4.055 5 H 0.061 0.939 6 C 0.031 3.969 7 C -0.510 4.510 8 H 0.081 0.919 9 C -0.003 4.003 10 N -0.937 5.937 11 Si 0.941 3.059 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.289 1.289 15 C -0.080 4.080 16 C -0.062 4.062 17 S -0.362 6.362 18 C -0.049 4.049 19 H 0.036 0.964 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.061 0.939 26 H -0.015 1.015 27 H 0.005 0.995 28 H 0.255 0.745 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -4.792 -9.914 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.205 4.205 4 C -0.076 4.076 5 H 0.080 0.920 6 C -0.007 4.007 7 C -0.548 4.548 8 H 0.099 0.901 9 C -0.199 4.199 10 N -0.580 5.580 11 Si 0.768 3.232 12 H -0.182 1.182 13 H -0.213 1.213 14 H -0.215 1.215 15 C -0.099 4.099 16 C -0.210 4.210 17 S -0.136 6.136 18 C -0.197 4.197 19 H 0.055 0.945 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.003 0.997 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.791 -6.241 -9.868 12.005 hybrid contribution 0.108 1.935 1.014 2.187 sum 2.900 -4.306 -8.854 10.264 Atomic orbital electron populations 1.21857 0.96032 1.01207 1.00822 1.20892 0.95449 0.95924 0.96675 1.22177 1.00421 0.97198 1.00694 1.21151 0.99325 0.90913 0.96206 0.92029 1.19091 0.95529 0.94120 0.91910 1.22068 1.22391 1.00855 1.09531 0.90115 1.25783 0.96017 1.01676 0.96459 1.70112 1.32973 1.38509 1.16363 0.85744 0.78402 0.81058 0.77990 1.18206 1.21347 1.21544 1.22504 1.00263 0.95401 0.91772 1.24394 1.04667 0.91249 1.00655 1.88859 1.98044 1.15027 1.11654 1.24378 1.05356 0.88902 1.01083 0.94494 0.92325 0.92642 0.90294 0.93700 0.93359 0.91975 0.99695 0.97631 0.93595 0.88238 0.87499 0.89794 0.87179 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.38 71.98 0.60 -3.86 16 2 C -0.07 -2.18 2.62 -10.79 -0.03 -2.21 16 3 C -0.15 -4.98 7.54 71.98 0.54 -4.43 16 4 C -0.06 -1.90 1.43 -10.80 -0.02 -1.92 16 5 H 0.06 2.14 7.98 -2.39 -0.02 2.12 16 6 C 0.03 1.43 4.18 29.85 0.12 1.55 16 7 C -0.51 -26.02 6.70 25.60 0.17 -25.84 16 8 H 0.08 3.88 4.96 -2.91 -0.01 3.87 16 9 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 10 N -0.94 -55.28 13.29 21.45 0.28 -55.00 16 11 Si 0.94 42.92 29.54 68.60 2.03 44.94 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 C -0.08 -2.35 2.37 -10.76 -0.03 -2.38 16 16 C -0.06 -1.86 7.04 72.00 0.51 -1.36 16 17 S -0.36 -10.56 24.80 -56.49 -1.40 -11.96 16 18 C -0.05 -1.20 6.61 72.00 0.48 -0.72 16 19 H 0.04 1.42 6.41 -2.39 -0.02 1.41 16 20 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 21 H 0.05 1.60 6.54 -2.39 -0.02 1.58 16 22 H 0.08 1.98 7.38 -2.39 -0.02 1.96 16 23 H 0.04 1.49 7.30 -2.39 -0.02 1.48 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 2.53 5.52 -2.39 -0.01 2.52 16 26 H -0.02 -0.80 7.72 -2.38 -0.02 -0.82 16 27 H 0.01 0.28 5.90 -2.38 -0.01 0.26 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.10 3.08 6.91 -2.39 -0.02 3.06 16 30 H 0.11 3.13 8.07 -2.39 -0.02 3.11 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.12 2.52 8.12 -2.39 -0.02 2.50 16 Total: -1.00 -58.35 264.96 4.80 -53.55 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.07 Total: 9.34 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 2.82 Total: -40.88 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.28 Total: -55.00 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.40 Total: -11.96 kcal Total: -58.35 4.80 -53.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.414 kcal (2) G-P(sol) polarization free energy of solvation -58.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds