Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 H 1.09005 * 109.46933 * 305.66443 * 3 2 1 5 5 C 1.52993 * 109.47214 * 185.66452 * 3 2 1 6 6 C 1.50701 * 109.47430 * 65.00037 * 5 3 2 7 7 H 1.07998 * 119.99472 * 0.02562 * 6 5 3 8 8 C 1.37874 * 120.00254 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00075 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47119 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47192 * 119.99841 * 10 8 6 13 13 H 1.48496 * 109.46683 * 239.99628 * 10 8 6 14 14 C 1.53001 * 109.47326 * 65.66070 * 3 2 1 15 15 H 1.08999 * 110.30514 * 302.60167 * 14 3 2 16 16 C 1.53709 * 110.33842 * 64.76309 * 14 3 2 17 17 C 1.52940 * 112.48821 * 116.04669 * 16 14 3 18 18 C 1.55153 * 108.96127 * 30.10785 * 17 16 14 19 19 S 1.83387 * 110.34386 * 180.31092 * 14 3 2 20 20 H 1.09007 * 109.46970 * 294.14421 * 1 2 3 21 21 H 1.09000 * 109.47350 * 54.14215 * 1 2 3 22 22 H 1.08999 * 109.47611 * 174.14499 * 1 2 3 23 23 H 1.09004 * 109.46830 * 239.99934 * 2 1 3 24 24 H 1.08993 * 109.47138 * 120.00446 * 2 1 3 25 25 H 1.09001 * 109.47515 * 185.00196 * 5 3 2 26 26 H 1.09000 * 109.47125 * 304.99579 * 5 3 2 27 27 H 0.96999 * 119.99947 * 180.02562 * 9 8 6 28 28 H 1.08993 * 108.89561 * 236.84562 * 16 14 3 29 29 H 1.09000 * 108.88802 * 355.39903 * 16 14 3 30 30 H 1.09009 * 109.60302 * 150.03081 * 17 16 14 31 31 H 1.09000 * 109.60576 * 270.35290 * 17 16 14 32 32 H 1.08998 * 111.13245 * 76.46555 * 18 17 16 33 33 H 1.08999 * 111.13170 * 200.65146 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9847 -0.8350 5 6 3.5633 1.4448 -0.1424 6 6 3.9428 0.8878 -1.4903 7 1 3.1742 0.5649 -2.1768 8 6 5.2710 0.7905 -1.8469 9 7 6.2069 1.1843 -1.0110 10 14 5.7413 0.1008 -3.5180 11 1 4.5120 -0.2669 -4.2655 12 1 6.4976 1.1257 -4.2816 13 1 6.5883 -1.1051 -3.3351 14 6 1.6495 2.1215 1.3143 15 1 0.5688 2.0866 1.4516 16 6 2.3603 1.4446 2.4971 17 6 3.3303 2.3858 3.2130 18 6 2.8064 3.8407 3.0870 19 16 2.2419 3.8569 1.3358 20 1 -0.3633 0.4204 0.9378 21 1 -0.3634 0.6020 -0.8329 22 1 -0.3634 -1.0223 -0.1048 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9350 2.4656 -0.0533 26 1 4.0025 0.8286 0.6422 27 1 7.1414 1.1162 -1.2621 28 1 1.6106 1.1016 3.2100 29 1 2.9160 0.5825 2.1284 30 1 3.3965 2.1110 4.2658 31 1 4.3161 2.3137 2.7536 32 1 1.9756 4.0198 3.7694 33 1 3.6075 4.5621 3.2482 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = -32.104295 kcal Electronic energy + Delta-G solvation = -12962.795621 eV Core-core repulsion = 10920.406096 eV Total energy + Delta-G solvation = -2042.389525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.51504 -34.07426 -32.46236 -29.72594 -28.07696 -25.35363 -23.71749 -22.06017 -20.90098 -18.19146 -16.61482 -16.07673 -15.10416 -14.44441 -13.87309 -13.70731 -13.60513 -12.90443 -12.66489 -12.21809 -11.90216 -11.56768 -11.30623 -11.12556 -10.93372 -10.68249 -10.57932 -10.31732 -10.20902 -10.00364 -9.69476 -9.27146 -9.00602 -8.87571 -8.25179 -6.99747 -5.91086 -3.90800 2.36592 2.89797 3.35020 3.42878 3.46426 4.52563 4.95399 5.12511 5.33413 5.40360 5.44865 5.56420 5.67041 5.70786 5.79308 5.86422 5.96821 6.05436 6.22380 6.38485 6.44920 6.47126 6.57182 6.61321 6.95988 7.06303 7.24324 7.81937 8.00279 8.15037 8.53668 9.15895 9.71136 11.20189 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.010300 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.259102 B = 2717.662669 C = 3235.004907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.068 4.068 4 H 0.061 0.939 5 C 0.024 3.976 6 C -0.512 4.512 7 H 0.053 0.947 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 C -0.023 4.023 15 H 0.082 0.918 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.072 4.072 19 S -0.295 6.295 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.015 0.985 27 H 0.257 0.743 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 0.662 7.836 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.088 4.088 4 H 0.079 0.921 5 C -0.013 4.013 6 C -0.551 4.551 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.152 4.152 15 H 0.100 0.900 16 C -0.166 4.166 17 C -0.162 4.162 18 C -0.220 4.220 19 S -0.067 6.067 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.020 1.582 7.016 10.772 hybrid contribution 0.329 -1.213 -0.064 1.258 sum -7.691 0.369 6.952 10.373 Atomic orbital electron populations 1.21879 0.97753 1.00495 1.00873 1.21563 0.93415 0.97230 1.02663 1.21261 1.01265 0.93785 0.92448 0.92055 1.19302 0.87080 0.98622 0.96288 1.21303 0.91588 1.40880 1.01289 0.92836 1.24967 0.96809 0.95847 0.96716 1.69976 0.99933 1.48072 1.35416 0.86654 0.78466 0.78685 0.84902 1.19859 1.21145 1.21222 1.23902 1.00428 0.91136 0.99710 0.90013 1.22120 0.98272 1.00595 0.95579 1.22375 1.01255 0.92000 1.00551 1.24248 1.02745 1.00181 0.94874 1.87817 1.82501 1.19727 1.16630 0.93608 0.93168 0.93658 0.90500 0.92697 0.94262 0.96647 0.93303 0.92502 0.88976 0.91207 0.89668 0.90245 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.55 37.16 0.35 -1.90 16 2 C -0.11 -1.99 5.16 -26.73 -0.14 -2.12 16 3 C -0.07 -1.38 1.64 -90.62 -0.15 -1.53 16 4 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 5 C 0.02 0.61 3.89 -27.89 -0.11 0.50 16 6 C -0.51 -14.30 8.33 -34.44 -0.29 -14.58 16 7 H 0.05 1.47 7.08 -52.49 -0.37 1.09 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.88 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C -0.02 -0.41 2.95 -26.36 -0.08 -0.49 16 15 H 0.08 1.31 6.66 -51.93 -0.35 0.96 16 16 C -0.13 -2.02 4.98 -26.39 -0.13 -2.15 16 17 C -0.12 -1.84 6.34 -25.62 -0.16 -2.01 16 18 C -0.07 -1.05 7.52 38.30 0.29 -0.76 16 19 S -0.29 -5.48 21.20 -107.50 -2.28 -7.76 16 20 H 0.04 0.62 6.83 -51.93 -0.35 0.26 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 1.54 6.81 -51.93 -0.35 1.19 16 24 H 0.05 0.96 6.56 -51.93 -0.34 0.62 16 25 H 0.04 1.09 6.82 -51.93 -0.35 0.73 16 26 H 0.02 0.40 6.49 -51.93 -0.34 0.07 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.62 4.95 -51.93 -0.26 1.37 16 30 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 266.79 15.07 4.02 4.02 Total: -1.00 -29.68 266.79 -8.28 -37.96 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.23 Total: -1.45 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -0.51 Total: -23.50 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -2.28 Total: -7.76 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.68 -8.28 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.859 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds