Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 H 1.09005 * 109.46933 * 305.66443 * 3 2 1 5 5 C 1.52993 * 109.47214 * 185.66452 * 3 2 1 6 6 C 1.50701 * 109.47430 * 65.00037 * 5 3 2 7 7 H 1.07998 * 119.99472 * 0.02562 * 6 5 3 8 8 C 1.37874 * 120.00254 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00075 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47119 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47192 * 119.99841 * 10 8 6 13 13 H 1.48496 * 109.46683 * 239.99628 * 10 8 6 14 14 C 1.53001 * 109.47326 * 65.66070 * 3 2 1 15 15 H 1.08999 * 110.30514 * 302.60167 * 14 3 2 16 16 C 1.53709 * 110.33842 * 64.76309 * 14 3 2 17 17 C 1.52940 * 112.48821 * 116.04669 * 16 14 3 18 18 C 1.55153 * 108.96127 * 30.10785 * 17 16 14 19 19 S 1.83387 * 110.34386 * 180.31092 * 14 3 2 20 20 H 1.09007 * 109.46970 * 294.14421 * 1 2 3 21 21 H 1.09000 * 109.47350 * 54.14215 * 1 2 3 22 22 H 1.08999 * 109.47611 * 174.14499 * 1 2 3 23 23 H 1.09004 * 109.46830 * 239.99934 * 2 1 3 24 24 H 1.08993 * 109.47138 * 120.00446 * 2 1 3 25 25 H 1.09001 * 109.47515 * 185.00196 * 5 3 2 26 26 H 1.09000 * 109.47125 * 304.99579 * 5 3 2 27 27 H 0.96999 * 119.99947 * 180.02562 * 9 8 6 28 28 H 1.08993 * 108.89561 * 236.84562 * 16 14 3 29 29 H 1.09000 * 108.88802 * 355.39903 * 16 14 3 30 30 H 1.09009 * 109.60302 * 150.03081 * 17 16 14 31 31 H 1.09000 * 109.60576 * 270.35290 * 17 16 14 32 32 H 1.08998 * 111.13245 * 76.46555 * 18 17 16 33 33 H 1.08999 * 111.13170 * 200.65146 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9847 -0.8350 5 6 3.5633 1.4448 -0.1424 6 6 3.9428 0.8878 -1.4903 7 1 3.1742 0.5649 -2.1768 8 6 5.2710 0.7905 -1.8469 9 7 6.2069 1.1843 -1.0110 10 14 5.7413 0.1008 -3.5180 11 1 4.5120 -0.2669 -4.2655 12 1 6.4976 1.1257 -4.2816 13 1 6.5883 -1.1051 -3.3351 14 6 1.6495 2.1215 1.3143 15 1 0.5688 2.0866 1.4516 16 6 2.3603 1.4446 2.4971 17 6 3.3303 2.3858 3.2130 18 6 2.8064 3.8407 3.0870 19 16 2.2419 3.8569 1.3358 20 1 -0.3633 0.4204 0.9378 21 1 -0.3634 0.6020 -0.8329 22 1 -0.3634 -1.0223 -0.1048 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9350 2.4656 -0.0533 26 1 4.0025 0.8286 0.6422 27 1 7.1414 1.1162 -1.2621 28 1 1.6106 1.1016 3.2100 29 1 2.9160 0.5825 2.1284 30 1 3.3965 2.1110 4.2658 31 1 4.3161 2.3137 2.7536 32 1 1.9756 4.0198 3.7694 33 1 3.6075 4.5621 3.2482 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = -48.209226 kcal Electronic energy + Delta-G solvation = -12963.493984 eV Core-core repulsion = 10920.406096 eV Total energy + Delta-G solvation = -2043.087888 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02982 -35.53308 -34.47255 -31.22623 -29.76712 -26.89046 -25.36034 -23.70840 -22.33081 -19.68996 -18.65173 -17.50981 -16.70596 -16.37078 -15.26001 -15.14818 -14.97251 -14.37442 -14.19203 -14.03902 -13.44249 -13.05518 -12.87907 -12.64510 -12.50819 -12.38220 -12.19729 -12.08426 -11.65032 -11.47869 -11.27323 -10.93712 -10.87955 -10.61596 -10.41457 -8.47697 -8.12484 -6.19179 1.04507 1.37973 1.39297 1.51080 1.58221 2.43574 3.20920 3.68354 3.88635 4.01436 4.10536 4.30276 4.37414 4.40327 4.54271 4.54834 4.75767 4.78770 4.96978 5.02831 5.10958 5.12584 5.19999 5.31817 5.40659 5.44963 5.56641 5.71861 5.94950 6.01725 6.37175 6.97965 7.46813 8.99126 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.010300 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.259102 B = 2717.662669 C = 3235.004907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.061 4.061 4 H 0.041 0.959 5 C 0.038 3.962 6 C -0.528 4.528 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.952 3.048 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.278 1.278 14 C -0.009 4.009 15 H 0.107 0.893 16 C -0.127 4.127 17 C -0.121 4.121 18 C -0.049 4.049 19 S -0.376 6.376 20 H 0.065 0.935 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.006 0.994 26 H -0.003 1.003 27 H 0.259 0.741 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 -0.065 8.878 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.081 4.081 4 H 0.060 0.940 5 C 0.001 3.999 6 C -0.566 4.566 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.777 3.223 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.204 1.204 14 C -0.137 4.137 15 H 0.125 0.875 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.196 4.196 19 S -0.149 6.149 20 H 0.084 0.916 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.024 0.976 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.520 0.851 8.056 12.501 hybrid contribution 0.821 -0.963 -0.350 1.312 sum -8.700 -0.112 7.706 11.622 Atomic orbital electron populations 1.21795 0.94520 1.01955 1.01849 1.21475 0.96189 0.95099 1.01713 1.21062 0.97580 0.95642 0.93810 0.94039 1.19061 0.90551 0.95800 0.94504 1.21724 0.91851 1.40575 1.02486 0.92875 1.25823 0.96891 0.96278 1.00575 1.70107 1.00269 1.49333 1.37440 0.85596 0.78357 0.78047 0.80256 1.18874 1.20895 1.20406 1.23852 1.01811 0.89449 0.98564 0.87481 1.22134 0.99025 0.99679 0.95698 1.22345 0.99064 0.92359 1.02268 1.24359 1.03915 0.99962 0.91400 1.88100 1.83291 1.21598 1.21885 0.91618 0.93453 0.91727 0.93157 0.92017 0.97581 0.98508 0.93196 0.88688 0.91266 0.87402 0.93412 0.86842 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.55 71.98 0.69 -3.19 16 2 C -0.11 -3.75 5.16 30.59 0.16 -3.60 16 3 C -0.06 -2.51 1.64 -10.80 -0.02 -2.53 16 4 H 0.04 1.84 8.14 -2.38 -0.02 1.83 16 5 C 0.04 1.99 3.89 29.85 0.12 2.11 16 6 C -0.53 -30.34 8.33 25.60 0.21 -30.13 16 7 H 0.05 2.98 7.08 -2.91 -0.02 2.96 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 10 Si 0.95 45.46 29.54 68.60 2.03 47.48 16 11 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C -0.01 -0.30 2.95 30.83 0.09 -0.21 16 15 H 0.11 3.10 6.66 -2.39 -0.02 3.08 16 16 C -0.13 -3.77 4.98 30.81 0.15 -3.62 16 17 C -0.12 -3.43 6.34 31.31 0.20 -3.23 16 18 C -0.05 -1.31 7.52 72.72 0.55 -0.76 16 19 S -0.38 -13.99 21.20 -56.49 -1.20 -15.19 16 20 H 0.06 1.52 6.83 -2.38 -0.02 1.50 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 2.03 6.81 -2.38 -0.02 2.02 16 24 H 0.06 2.09 6.56 -2.39 -0.02 2.08 16 25 H 0.01 0.34 6.82 -2.39 -0.02 0.33 16 26 H 0.00 -0.19 6.49 -2.39 -0.02 -0.20 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.40 4.95 -2.39 -0.01 2.39 16 30 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -66.38 266.79 4.79 -61.59 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.07 Total: 7.86 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 2.61 Total: -44.60 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: -13.99 SS G_CDS: -1.20 Total: -15.19 kcal Total: -66.38 4.79 -61.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.384 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds