Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 H 1.08999 * 109.47229 * 304.75961 * 3 2 1 5 5 C 1.52995 * 109.47532 * 64.76187 * 3 2 1 6 6 C 1.50696 * 109.47821 * 185.58946 * 5 3 2 7 7 H 1.08003 * 119.99294 * 4.97081 * 6 5 3 8 8 C 1.37876 * 120.00383 * 184.97353 * 6 5 3 9 9 N 1.31516 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47441 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47204 * 120.00350 * 10 8 6 13 13 H 1.48502 * 109.46981 * 239.99945 * 10 8 6 14 14 C 1.53012 * 109.47182 * 184.76380 * 3 2 1 15 15 H 1.08997 * 110.75569 * 182.96024 * 14 3 2 16 16 C 1.54725 * 110.88121 * 59.16696 * 14 3 2 17 17 C 1.53852 * 107.10181 * 199.66434 * 16 14 3 18 18 C 1.54272 * 108.78305 * 47.29505 * 17 16 14 19 19 S 1.83094 * 104.65011 * 332.13632 * 18 17 16 20 20 H 1.08991 * 109.47361 * 54.04699 * 1 2 3 21 21 H 1.08998 * 109.47319 * 174.05106 * 1 2 3 22 22 H 1.09007 * 109.46826 * 294.04167 * 1 2 3 23 23 H 1.09005 * 109.46996 * 240.00446 * 2 1 3 24 24 H 1.08999 * 109.47486 * 120.00245 * 2 1 3 25 25 H 1.09004 * 109.47304 * 305.59329 * 5 3 2 26 26 H 1.09005 * 109.47196 * 65.58501 * 5 3 2 27 27 H 0.97001 * 119.99765 * 179.97438 * 9 8 6 28 28 H 1.09005 * 109.76491 * 80.29845 * 16 14 3 29 29 H 1.09000 * 109.98324 * 319.15098 * 16 14 3 30 30 H 1.09001 * 109.61214 * 287.46592 * 17 16 14 31 31 H 1.09001 * 109.61359 * 167.13069 * 17 16 14 32 32 H 1.08997 * 110.39887 * 90.92692 * 18 17 16 33 33 H 1.08997 * 110.40160 * 213.33915 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6087 1.9803 -0.8443 5 6 1.6301 2.1284 1.3047 6 6 2.0113 3.5852 1.2478 7 1 2.4238 4.0003 0.3400 8 6 1.8337 4.3881 2.3545 9 7 1.3311 3.8826 3.4598 10 14 2.3057 6.1941 2.2837 11 1 2.8438 6.5126 0.9368 12 1 1.1071 7.0297 2.5488 13 1 3.3420 6.4755 3.3094 14 6 3.5654 1.4442 -0.1198 15 1 3.9556 2.4606 -0.0694 16 6 4.0172 0.7385 -1.4205 17 6 5.4920 0.3430 -1.2318 18 6 5.6521 -0.3355 0.1444 19 16 4.3233 0.3885 1.1751 20 1 -0.3633 0.6033 -0.8318 21 1 -0.3634 -1.0221 -0.1065 22 1 -0.3633 0.4187 0.9386 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5520 2.0399 1.4387 26 1 2.1404 1.6517 2.1417 27 1 1.2065 4.4474 4.2385 28 1 3.9200 1.4224 -2.2638 29 1 3.4118 -0.1518 -1.5909 30 1 6.1182 1.2341 -1.2754 31 1 5.7882 -0.3510 -2.0185 32 1 5.5185 -1.4135 0.0543 33 1 6.6296 -0.1072 0.5691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = -33.825246 kcal Electronic energy + Delta-G solvation = -12879.242810 eV Core-core repulsion = 10836.778659 eV Total energy + Delta-G solvation = -2042.464151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.22939 -34.50331 -32.44563 -29.86558 -28.03308 -25.27245 -23.30017 -22.31261 -20.50675 -19.03369 -16.47130 -15.59119 -15.42708 -14.55951 -13.93637 -13.73212 -13.61783 -12.92908 -12.47935 -12.28712 -11.91392 -11.38636 -11.19538 -11.15155 -10.99598 -10.74197 -10.68034 -10.50373 -10.14099 -10.02679 -9.85625 -9.30311 -8.91494 -8.81745 -8.27090 -6.93897 -5.92985 -3.94231 2.41346 3.07436 3.34207 3.41840 3.44552 4.50913 4.91597 4.94735 5.19961 5.40120 5.43149 5.59823 5.63058 5.74870 5.81556 5.87967 5.93851 6.07204 6.13498 6.34813 6.43094 6.47943 6.54252 6.78899 6.85067 7.06004 7.18609 7.75678 7.90906 8.08155 8.48442 9.11707 9.68641 11.18233 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.010458 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.209984 B = 2676.614440 C = 3140.442372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.066 4.066 4 H 0.065 0.935 5 C 0.025 3.975 6 C -0.515 4.515 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.014 4.014 15 H 0.103 0.897 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.092 4.092 19 S -0.271 6.271 20 H 0.046 0.954 21 H 0.040 0.960 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.029 0.971 27 H 0.258 0.742 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -7.705 -9.030 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.086 4.086 4 H 0.083 0.917 5 C -0.012 4.012 6 C -0.554 4.554 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.142 4.142 15 H 0.121 0.879 16 C -0.175 4.175 17 C -0.164 4.164 18 C -0.240 4.240 19 S -0.045 6.045 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.874 -7.829 -7.695 12.011 hybrid contribution 0.623 1.299 -1.095 1.809 sum 5.497 -6.530 -8.789 12.252 Atomic orbital electron populations 1.21788 0.96642 0.99881 1.02281 1.21737 0.95144 0.97507 1.01513 1.21183 0.90155 0.95184 1.02033 0.91655 1.19233 0.96725 0.94528 0.90704 1.21240 1.41659 0.94644 0.97814 0.92908 1.24976 0.95421 0.98229 0.95589 1.69975 1.45172 1.35553 1.02457 0.86635 0.78132 0.85867 0.77960 1.19863 1.21156 1.21085 1.24072 0.99453 0.99871 0.90783 0.87912 1.22778 0.95153 1.01226 0.98306 1.22251 0.97565 1.00611 0.95980 1.23960 1.00728 1.02205 0.97146 1.87887 1.37170 1.56802 1.22629 0.93466 0.94089 0.91952 0.93471 0.90925 0.96297 0.95277 0.93184 0.90554 0.90248 0.91190 0.91000 0.89973 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.52 37.16 0.35 -2.13 16 2 C -0.12 -2.14 4.80 -26.73 -0.13 -2.27 16 3 C -0.07 -1.33 1.71 -90.62 -0.16 -1.48 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 5 C 0.03 0.64 4.25 -27.89 -0.12 0.52 16 6 C -0.52 -14.38 8.29 -34.44 -0.29 -14.67 16 7 H 0.05 1.43 7.34 -52.48 -0.39 1.05 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C -0.01 -0.25 2.86 -25.82 -0.07 -0.33 16 15 H 0.10 2.14 7.13 -51.93 -0.37 1.77 16 16 C -0.14 -1.94 5.77 -25.38 -0.15 -2.09 16 17 C -0.13 -1.58 6.40 -25.62 -0.16 -1.74 16 18 C -0.09 -1.28 7.33 37.82 0.28 -1.00 16 19 S -0.27 -5.16 20.06 -107.50 -2.16 -7.32 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.16 6.73 -51.93 -0.35 0.81 16 23 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 24 H 0.07 1.37 7.01 -51.93 -0.36 1.01 16 25 H 0.02 0.51 6.44 -51.93 -0.33 0.18 16 26 H 0.03 0.82 7.14 -51.93 -0.37 0.45 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.10 5.79 -51.93 -0.30 0.80 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -29.97 267.58 -8.25 -38.22 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.30 Total: -1.84 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -0.54 Total: -23.58 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.16 Total: -7.32 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.97 -8.25 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.391 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds