Wall clock time and date at job start Mon Mar 30 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 H 1.08999 * 109.47229 * 304.75961 * 3 2 1 5 5 C 1.52995 * 109.47532 * 64.76187 * 3 2 1 6 6 C 1.50696 * 109.47821 * 185.58946 * 5 3 2 7 7 H 1.08003 * 119.99294 * 4.97081 * 6 5 3 8 8 C 1.37876 * 120.00383 * 184.97353 * 6 5 3 9 9 N 1.31516 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47441 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47204 * 120.00350 * 10 8 6 13 13 H 1.48502 * 109.46981 * 239.99945 * 10 8 6 14 14 C 1.53012 * 109.47182 * 184.76380 * 3 2 1 15 15 H 1.08997 * 110.75569 * 182.96024 * 14 3 2 16 16 C 1.54725 * 110.88121 * 59.16696 * 14 3 2 17 17 C 1.53852 * 107.10181 * 199.66434 * 16 14 3 18 18 C 1.54272 * 108.78305 * 47.29505 * 17 16 14 19 19 S 1.83094 * 104.65011 * 332.13632 * 18 17 16 20 20 H 1.08991 * 109.47361 * 54.04699 * 1 2 3 21 21 H 1.08998 * 109.47319 * 174.05106 * 1 2 3 22 22 H 1.09007 * 109.46826 * 294.04167 * 1 2 3 23 23 H 1.09005 * 109.46996 * 240.00446 * 2 1 3 24 24 H 1.08999 * 109.47486 * 120.00245 * 2 1 3 25 25 H 1.09004 * 109.47304 * 305.59329 * 5 3 2 26 26 H 1.09005 * 109.47196 * 65.58501 * 5 3 2 27 27 H 0.97001 * 119.99765 * 179.97438 * 9 8 6 28 28 H 1.09005 * 109.76491 * 80.29845 * 16 14 3 29 29 H 1.09000 * 109.98324 * 319.15098 * 16 14 3 30 30 H 1.09001 * 109.61214 * 287.46592 * 17 16 14 31 31 H 1.09001 * 109.61359 * 167.13069 * 17 16 14 32 32 H 1.08997 * 110.39887 * 90.92692 * 18 17 16 33 33 H 1.08997 * 110.40160 * 213.33915 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6087 1.9803 -0.8443 5 6 1.6301 2.1284 1.3047 6 6 2.0113 3.5852 1.2478 7 1 2.4238 4.0003 0.3400 8 6 1.8337 4.3881 2.3545 9 7 1.3311 3.8826 3.4598 10 14 2.3057 6.1941 2.2837 11 1 2.8438 6.5126 0.9368 12 1 1.1071 7.0297 2.5488 13 1 3.3420 6.4755 3.3094 14 6 3.5654 1.4442 -0.1198 15 1 3.9556 2.4606 -0.0694 16 6 4.0172 0.7385 -1.4205 17 6 5.4920 0.3430 -1.2318 18 6 5.6521 -0.3355 0.1444 19 16 4.3233 0.3885 1.1751 20 1 -0.3633 0.6033 -0.8318 21 1 -0.3634 -1.0221 -0.1065 22 1 -0.3633 0.4187 0.9386 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5520 2.0399 1.4387 26 1 2.1404 1.6517 2.1417 27 1 1.2065 4.4474 4.2385 28 1 3.9200 1.4224 -2.2638 29 1 3.4118 -0.1518 -1.5909 30 1 6.1182 1.2341 -1.2754 31 1 5.7882 -0.3510 -2.0185 32 1 5.5185 -1.4135 0.0543 33 1 6.6296 -0.1072 0.5691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:28 Heat of formation + Delta-G solvation = -50.362875 kcal Electronic energy + Delta-G solvation = -12879.959936 eV Core-core repulsion = 10836.778659 eV Total energy + Delta-G solvation = -2043.181277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.71262 -35.86762 -34.48829 -31.35847 -29.73016 -26.85364 -24.87605 -23.96368 -21.74122 -20.62229 -18.57479 -17.08066 -16.65597 -16.54886 -15.39270 -15.20249 -14.96092 -14.35542 -14.12679 -13.75701 -13.66451 -13.00867 -12.84857 -12.56751 -12.51765 -12.39310 -12.20265 -11.87734 -11.75190 -11.63390 -11.43938 -11.10105 -10.70521 -10.51447 -10.37287 -8.44328 -8.14969 -6.23437 1.09275 1.37280 1.38124 1.50015 1.76204 2.41719 3.18650 3.75177 3.87752 4.02667 4.20877 4.21358 4.33658 4.43858 4.58898 4.77375 4.83939 4.85826 4.96065 4.98354 5.05324 5.07738 5.20220 5.28057 5.39265 5.47285 5.54044 5.63891 5.82470 5.95307 6.30828 6.93406 7.43851 8.97037 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.010458 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.209984 B = 2676.614440 C = 3140.442372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.060 4.060 4 H 0.068 0.932 5 C 0.033 3.967 6 C -0.524 4.524 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.956 3.044 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.284 1.284 14 C -0.006 4.006 15 H 0.073 0.927 16 C -0.127 4.127 17 C -0.121 4.121 18 C -0.070 4.070 19 S -0.360 6.360 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.080 0.920 24 H 0.054 0.946 25 H -0.008 1.008 26 H -0.006 1.006 27 H 0.259 0.741 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -8.188 -11.626 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.004 4.004 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.781 3.219 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.210 1.210 14 C -0.134 4.134 15 H 0.091 0.909 16 C -0.165 4.165 17 C -0.159 4.159 18 C -0.217 4.217 19 S -0.134 6.134 20 H 0.074 0.926 21 H 0.087 0.913 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.152 -8.314 -10.310 14.604 hybrid contribution 0.247 1.401 -0.272 1.448 sum 6.400 -6.913 -10.582 14.168 Atomic orbital electron populations 1.21762 0.96097 1.01584 1.00922 1.21645 0.95570 0.95589 1.02182 1.21025 0.91811 0.96394 0.98702 0.91332 1.19060 0.94489 0.94070 0.92746 1.21649 1.40824 0.95889 0.97892 0.92385 1.25901 0.95521 1.03148 0.95276 1.70123 1.46723 1.37360 1.03275 0.85537 0.77855 0.80054 0.78469 1.18363 1.20533 1.20961 1.23920 0.97851 0.98754 0.92925 0.90866 1.22757 0.96506 1.01396 0.95875 1.22270 0.96165 1.01491 0.95947 1.24076 0.98311 1.02937 0.96409 1.88187 1.40749 1.57939 1.26565 0.92579 0.91261 0.95111 0.90178 0.92683 0.99016 0.98721 0.93184 0.88776 0.89149 0.91018 0.87216 0.87909 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 9.52 71.98 0.69 -4.11 16 2 C -0.11 -3.86 4.80 30.59 0.15 -3.71 16 3 C -0.06 -2.42 1.71 -10.79 -0.02 -2.44 16 4 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 5 C 0.03 1.79 4.25 29.84 0.13 1.92 16 6 C -0.52 -30.07 8.29 25.60 0.21 -29.85 16 7 H 0.06 3.18 7.34 -2.91 -0.02 3.16 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -58.92 13.29 21.45 0.28 -58.64 16 10 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 C -0.01 -0.23 2.86 31.19 0.09 -0.14 16 15 H 0.07 3.08 7.13 -2.39 -0.02 3.06 16 16 C -0.13 -3.20 5.77 31.47 0.18 -3.01 16 17 C -0.12 -2.52 6.40 31.31 0.20 -2.32 16 18 C -0.07 -1.72 7.33 72.41 0.53 -1.19 16 19 S -0.36 -13.78 20.06 -56.49 -1.13 -14.91 16 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.03 1.17 6.73 -2.38 -0.02 1.16 16 23 H 0.08 2.23 5.97 -2.38 -0.01 2.22 16 24 H 0.05 2.10 7.01 -2.39 -0.02 2.08 16 25 H -0.01 -0.49 6.44 -2.39 -0.02 -0.50 16 26 H -0.01 -0.34 7.14 -2.38 -0.02 -0.35 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.09 2.10 5.79 -2.39 -0.01 2.09 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.96 267.58 4.86 -63.10 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.06 Total: 7.27 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 2.62 Total: -44.49 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.28 Total: -58.64 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: -13.78 SS G_CDS: -1.13 Total: -14.91 kcal Total: -67.96 4.86 -63.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.741 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds