Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 H 1.08998 * 109.46583 * 305.64587 * 3 2 1 5 5 C 1.52999 * 109.46884 * 65.64407 * 3 2 1 6 6 C 1.50702 * 109.47651 * 62.44969 * 5 3 2 7 7 H 1.08003 * 119.99005 * 354.61817 * 6 5 3 8 8 C 1.37872 * 120.00218 * 174.34364 * 6 5 3 9 9 N 1.31512 * 119.99987 * 0.27220 * 8 6 5 10 10 Si 1.86803 * 119.99875 * 180.27712 * 8 6 5 11 11 H 1.48497 * 109.47122 * 59.99470 * 10 8 6 12 12 H 1.48498 * 109.46987 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46925 * 299.99549 * 10 8 6 14 14 C 1.52994 * 109.47183 * 185.64237 * 3 2 1 15 15 H 1.09002 * 110.76292 * 299.29952 * 14 3 2 16 16 C 1.55140 * 110.85594 * 62.79375 * 14 3 2 17 17 C 1.54038 * 106.80712 * 160.10412 * 16 14 3 18 18 C 1.54275 * 109.08935 * 313.05484 * 17 16 14 19 19 S 1.83093 * 104.64873 * 27.82674 * 18 17 16 20 20 H 1.09005 * 109.47116 * 174.11349 * 1 2 3 21 21 H 1.09003 * 109.47365 * 294.11430 * 1 2 3 22 22 H 1.08998 * 109.47527 * 54.11866 * 1 2 3 23 23 H 1.08996 * 109.47228 * 239.99701 * 2 1 3 24 24 H 1.09008 * 109.46582 * 119.99852 * 2 1 3 25 25 H 1.09003 * 109.47466 * 302.44648 * 5 3 2 26 26 H 1.09004 * 109.46954 * 182.44744 * 5 3 2 27 27 H 0.97001 * 119.99490 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.97514 * 279.65652 * 16 14 3 29 29 H 1.09000 * 109.97184 * 40.93538 * 16 14 3 30 30 H 1.09007 * 109.63539 * 193.02259 * 17 16 14 31 31 H 1.08999 * 109.28147 * 72.87849 * 17 16 14 32 32 H 1.09000 * 110.40047 * 269.03219 * 18 17 16 33 33 H 1.09002 * 110.40139 * 146.61148 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 1.6491 2.1216 1.3141 6 6 2.3109 1.4080 2.4647 7 1 2.8757 0.5048 2.2868 8 6 2.2002 1.9114 3.7435 9 7 1.5126 3.0113 3.9600 10 14 3.0272 1.0311 5.1686 11 1 4.4919 0.9728 4.9314 12 1 2.7592 1.7693 6.4289 13 1 2.4881 -0.3484 5.2781 14 6 3.5633 1.4449 -0.1418 15 1 4.0297 0.9178 0.6905 16 6 3.9927 0.8255 -1.4978 17 6 5.4266 1.3144 -1.7767 18 6 5.4992 2.8348 -1.5249 19 16 4.2047 3.1588 -0.2712 20 1 -0.3633 -1.0223 -0.1054 21 1 -0.3634 0.4199 0.9380 22 1 -0.3634 0.6023 -0.8326 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8901 25 1 0.5666 2.0814 1.4360 26 1 1.9743 3.1618 1.2963 27 1 1.4350 3.3655 4.8597 28 1 3.9723 -0.2624 -1.4334 29 1 3.3253 1.1646 -2.2900 30 1 5.6911 1.1022 -2.8126 31 1 6.1184 0.7998 -1.1099 32 1 5.2850 3.3825 -2.4426 33 1 6.4803 3.1094 -1.1376 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -34.831523 kcal Electronic energy + Delta-G solvation = -12918.626016 eV Core-core repulsion = 10876.118229 eV Total energy + Delta-G solvation = -2042.507787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.19461 -34.57506 -32.27835 -29.79494 -27.92461 -25.20710 -23.30621 -22.53686 -20.49391 -18.97658 -16.42251 -15.59768 -15.15746 -14.59285 -14.05015 -13.84671 -13.30280 -12.67243 -12.57131 -12.39796 -11.83824 -11.34720 -11.29923 -11.12773 -10.93739 -10.63408 -10.59690 -10.47576 -10.31651 -9.98502 -9.81423 -9.31503 -8.94939 -8.69614 -8.24734 -6.96660 -5.90632 -3.91169 2.44188 3.11609 3.37316 3.42231 3.43824 4.52709 4.92968 4.95532 5.21141 5.40911 5.46363 5.60041 5.74116 5.79906 5.84448 5.90349 5.96169 6.08038 6.14764 6.33471 6.40656 6.50968 6.62715 6.75994 6.88137 7.12966 7.21295 7.76169 7.89110 8.08722 8.50000 9.13001 9.71182 11.20796 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.011214 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.739004 B = 2496.226007 C = 2988.759847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.063 4.063 4 H 0.051 0.949 5 C 0.024 3.976 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.279 1.279 14 C -0.012 4.012 15 H 0.104 0.896 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.093 4.093 19 S -0.272 6.272 20 H 0.040 0.960 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.018 0.982 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 -4.581 -10.765 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.083 4.083 4 H 0.069 0.931 5 C -0.013 4.013 6 C -0.546 4.546 7 H 0.072 0.928 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.140 4.140 15 H 0.122 0.878 16 C -0.169 4.169 17 C -0.165 4.165 18 C -0.241 4.241 19 S -0.044 6.044 20 H 0.059 0.941 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.274 -3.409 -10.072 11.460 hybrid contribution 0.873 -1.414 0.359 1.700 sum 5.148 -4.823 -9.713 12.004 Atomic orbital electron populations 1.21728 0.96498 0.99865 1.02191 1.21506 0.95545 0.96790 1.00790 1.21194 0.90183 0.96150 1.00772 0.93065 1.19205 0.96595 0.96045 0.89462 1.21100 1.32093 1.09545 0.91891 0.92779 1.24958 0.95483 0.94937 0.98761 1.69951 1.41168 1.20989 1.21190 0.86793 0.80134 0.79687 0.82199 1.20322 1.21441 1.20436 1.24106 1.00182 0.91283 0.98445 0.87814 1.22798 0.95451 1.01175 0.97447 1.22290 0.98071 0.94124 1.02027 1.23961 1.01060 0.98373 1.00739 1.88016 1.43726 1.18659 1.53975 0.94127 0.91501 0.93880 0.94172 0.90905 0.96405 0.95472 0.93138 0.90356 0.91006 0.91019 0.91205 0.90016 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.54 37.16 0.35 -2.13 16 2 C -0.11 -1.92 5.16 -26.73 -0.14 -2.06 16 3 C -0.06 -1.27 1.73 -90.62 -0.16 -1.43 16 4 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.02 0.61 4.38 -27.88 -0.12 0.49 16 6 C -0.51 -13.81 7.57 -34.44 -0.26 -14.07 16 7 H 0.05 1.42 5.75 -52.48 -0.30 1.12 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 10 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 C -0.01 -0.22 2.41 -25.60 -0.06 -0.29 16 15 H 0.10 2.15 6.66 -51.93 -0.35 1.81 16 16 C -0.13 -1.87 5.05 -25.06 -0.13 -2.00 16 17 C -0.13 -1.62 6.38 -25.52 -0.16 -1.78 16 18 C -0.09 -1.33 7.34 37.82 0.28 -1.05 16 19 S -0.27 -5.35 21.66 -107.50 -2.33 -7.68 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 1.30 6.82 -51.93 -0.35 0.94 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.61 6.88 -51.93 -0.36 0.26 16 24 H 0.07 1.43 6.52 -51.92 -0.34 1.09 16 25 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 26 H 0.03 0.77 7.29 -51.93 -0.38 0.39 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.08 1.02 7.64 -51.93 -0.40 0.63 16 29 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 268.36 15.07 4.04 4.04 Total: -1.00 -29.65 268.36 -8.39 -38.04 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.33 Total: -2.17 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -0.49 Total: -22.71 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.33 Total: -7.68 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.65 -8.39 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.213 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds