Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 H 1.08998 * 109.46583 * 305.64587 * 3 2 1 5 5 C 1.52999 * 109.46884 * 65.64407 * 3 2 1 6 6 C 1.50702 * 109.47651 * 62.44969 * 5 3 2 7 7 H 1.08003 * 119.99005 * 354.61817 * 6 5 3 8 8 C 1.37872 * 120.00218 * 174.34364 * 6 5 3 9 9 N 1.31512 * 119.99987 * 0.27220 * 8 6 5 10 10 Si 1.86803 * 119.99875 * 180.27712 * 8 6 5 11 11 H 1.48497 * 109.47122 * 59.99470 * 10 8 6 12 12 H 1.48498 * 109.46987 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46925 * 299.99549 * 10 8 6 14 14 C 1.52994 * 109.47183 * 185.64237 * 3 2 1 15 15 H 1.09002 * 110.76292 * 299.29952 * 14 3 2 16 16 C 1.55140 * 110.85594 * 62.79375 * 14 3 2 17 17 C 1.54038 * 106.80712 * 160.10412 * 16 14 3 18 18 C 1.54275 * 109.08935 * 313.05484 * 17 16 14 19 19 S 1.83093 * 104.64873 * 27.82674 * 18 17 16 20 20 H 1.09005 * 109.47116 * 174.11349 * 1 2 3 21 21 H 1.09003 * 109.47365 * 294.11430 * 1 2 3 22 22 H 1.08998 * 109.47527 * 54.11866 * 1 2 3 23 23 H 1.08996 * 109.47228 * 239.99701 * 2 1 3 24 24 H 1.09008 * 109.46582 * 119.99852 * 2 1 3 25 25 H 1.09003 * 109.47466 * 302.44648 * 5 3 2 26 26 H 1.09004 * 109.46954 * 182.44744 * 5 3 2 27 27 H 0.97001 * 119.99490 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.97514 * 279.65652 * 16 14 3 29 29 H 1.09000 * 109.97184 * 40.93538 * 16 14 3 30 30 H 1.09007 * 109.63539 * 193.02259 * 17 16 14 31 31 H 1.08999 * 109.28147 * 72.87849 * 17 16 14 32 32 H 1.09000 * 110.40047 * 269.03219 * 18 17 16 33 33 H 1.09002 * 110.40139 * 146.61148 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 1.6491 2.1216 1.3141 6 6 2.3109 1.4080 2.4647 7 1 2.8757 0.5048 2.2868 8 6 2.2002 1.9114 3.7435 9 7 1.5126 3.0113 3.9600 10 14 3.0272 1.0311 5.1686 11 1 4.4919 0.9728 4.9314 12 1 2.7592 1.7693 6.4289 13 1 2.4881 -0.3484 5.2781 14 6 3.5633 1.4449 -0.1418 15 1 4.0297 0.9178 0.6905 16 6 3.9927 0.8255 -1.4978 17 6 5.4266 1.3144 -1.7767 18 6 5.4992 2.8348 -1.5249 19 16 4.2047 3.1588 -0.2712 20 1 -0.3633 -1.0223 -0.1054 21 1 -0.3634 0.4199 0.9380 22 1 -0.3634 0.6023 -0.8326 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8901 25 1 0.5666 2.0814 1.4360 26 1 1.9743 3.1618 1.2963 27 1 1.4350 3.3655 4.8597 28 1 3.9723 -0.2624 -1.4334 29 1 3.3253 1.1646 -2.2900 30 1 5.6911 1.1022 -2.8126 31 1 6.1184 0.7998 -1.1099 32 1 5.2850 3.3825 -2.4426 33 1 6.4803 3.1094 -1.1376 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -51.160583 kcal Electronic energy + Delta-G solvation = -12919.334097 eV Core-core repulsion = 10876.118229 eV Total energy + Delta-G solvation = -2043.215868 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.71612 -35.92841 -34.31867 -31.24767 -29.63072 -26.83511 -24.99294 -24.05086 -21.69519 -20.70346 -18.28671 -17.22427 -16.65838 -16.31077 -15.62531 -15.27345 -14.61107 -14.43292 -14.04503 -13.77519 -13.50985 -13.04479 -12.83569 -12.61108 -12.45216 -12.38558 -12.25376 -12.02464 -11.66779 -11.63083 -11.38171 -10.96907 -10.78831 -10.48661 -10.33675 -8.53101 -8.10678 -6.16964 1.09501 1.38831 1.41747 1.48085 1.77703 2.44445 3.23696 3.74998 3.85288 4.04841 4.17442 4.31374 4.39033 4.48075 4.55076 4.74751 4.79259 4.89776 4.98812 5.01124 5.04613 5.13756 5.16223 5.31202 5.33612 5.50959 5.58579 5.70626 5.79824 5.94647 6.34708 6.97454 7.49247 9.01639 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.011214 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.739004 B = 2496.226007 C = 2988.759847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.056 4.056 4 H 0.054 0.946 5 C 0.031 3.969 6 C -0.505 4.505 7 H 0.063 0.937 8 C -0.003 4.003 9 N -0.937 5.937 10 Si 0.950 3.050 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.265 1.265 14 C 0.000 4.000 15 H 0.079 0.921 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.068 4.068 19 S -0.377 6.377 20 H 0.068 0.932 21 H 0.030 0.970 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.054 0.946 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.257 0.743 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -6.886 -12.677 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.076 4.076 4 H 0.073 0.927 5 C -0.006 4.006 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.199 4.199 9 N -0.579 5.579 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.189 1.189 14 C -0.128 4.128 15 H 0.097 0.903 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.216 4.216 19 S -0.149 6.149 20 H 0.087 0.913 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.762 -5.734 -11.996 14.490 hybrid contribution 0.419 -0.652 0.890 1.180 sum 6.181 -6.386 -11.106 14.224 Atomic orbital electron populations 1.21698 0.96023 1.01558 1.00789 1.21469 0.95977 0.94913 1.01704 1.21043 0.91768 0.97232 0.97512 0.92727 1.19038 0.94602 0.94442 0.92482 1.21452 1.31057 1.09415 0.92352 0.91865 1.25861 0.96396 0.95765 1.01900 1.70114 1.43228 1.22931 1.21586 0.85722 0.79219 0.78917 0.78557 1.19612 1.21593 1.18936 1.23984 0.98432 0.89809 1.00614 0.90284 1.22788 0.96654 1.02146 0.94396 1.22316 0.96900 0.92388 1.04393 1.24069 0.98636 1.00099 0.98805 1.88364 1.47404 1.21619 1.57554 0.91348 0.95049 0.92677 0.90237 0.92761 0.99100 0.99422 0.93407 0.88046 0.90108 0.87210 0.90843 0.88125 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.54 71.98 0.69 -4.02 16 2 C -0.10 -3.46 5.16 30.59 0.16 -3.30 16 3 C -0.06 -2.24 1.73 -10.80 -0.02 -2.26 16 4 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 5 C 0.03 1.67 4.38 29.85 0.13 1.80 16 6 C -0.50 -28.15 7.57 25.60 0.19 -27.95 16 7 H 0.06 3.34 5.75 -2.91 -0.02 3.32 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 10 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.00 -0.01 2.41 31.33 0.08 0.06 16 15 H 0.08 3.26 6.66 -2.39 -0.02 3.24 16 16 C -0.12 -3.03 5.05 31.68 0.16 -2.87 16 17 C -0.12 -2.57 6.38 31.38 0.20 -2.37 16 18 C -0.07 -1.76 7.34 72.41 0.53 -1.23 16 19 S -0.38 -15.00 21.66 -56.49 -1.22 -16.22 16 20 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 21 H 0.03 1.23 6.82 -2.39 -0.02 1.21 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 23 H 0.08 2.11 6.88 -2.39 -0.02 2.10 16 24 H 0.05 2.05 6.52 -2.38 -0.02 2.04 16 25 H -0.01 -0.53 6.61 -2.39 -0.02 -0.55 16 26 H -0.01 -0.77 7.29 -2.38 -0.02 -0.78 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.10 2.13 7.64 -2.39 -0.02 2.11 16 29 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.89 268.36 4.73 -63.17 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.06 Total: 6.23 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 2.58 Total: -41.83 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.28 Total: -58.81 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: -15.00 SS G_CDS: -1.22 Total: -16.22 kcal Total: -67.89 4.73 -63.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.005 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds