Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 H 1.09001 * 109.46941 * 185.10247 * 3 2 1 5 5 C 1.52997 * 109.46945 * 65.10727 * 3 2 1 6 6 C 1.50703 * 109.47441 * 64.99959 * 5 3 2 7 7 H 1.08001 * 119.99583 * 359.97438 * 6 5 3 8 8 C 1.37875 * 120.00282 * 180.02562 * 6 5 3 9 9 N 1.31512 * 119.99787 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00041 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47101 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47214 * 119.99880 * 10 8 6 13 13 H 1.48498 * 109.47254 * 239.99632 * 10 8 6 14 14 C 1.52992 * 109.47418 * 305.10553 * 3 2 1 15 15 H 1.08996 * 110.35993 * 61.88434 * 14 3 2 16 16 C 1.54275 * 110.40285 * 299.56069 * 14 3 2 17 17 C 1.54022 * 108.84477 * 213.34762 * 16 14 3 18 18 C 1.55145 * 106.98211 * 47.10034 * 17 16 14 19 19 S 1.83098 * 110.40326 * 184.20782 * 14 3 2 20 20 H 1.09006 * 109.47182 * 63.48833 * 1 2 3 21 21 H 1.09003 * 109.47399 * 183.49149 * 1 2 3 22 22 H 1.08997 * 109.46755 * 303.49250 * 1 2 3 23 23 H 1.09000 * 109.47121 * 240.00085 * 2 1 3 24 24 H 1.09004 * 109.46703 * 120.00336 * 2 1 3 25 25 H 1.08994 * 109.47463 * 304.99581 * 5 3 2 26 26 H 1.09003 * 109.47177 * 184.99368 * 5 3 2 27 27 H 0.97003 * 120.00027 * 180.02562 * 9 8 6 28 28 H 1.09005 * 109.60758 * 333.17213 * 16 14 3 29 29 H 1.08996 * 109.61465 * 93.33286 * 16 14 3 30 30 H 1.09001 * 109.88727 * 287.74346 * 17 16 14 31 31 H 1.08997 * 110.01275 * 166.52794 * 17 16 14 32 32 H 1.09007 * 110.85261 * 199.76091 * 18 17 16 33 33 H 1.09001 * 111.03019 * 76.20220 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1262 1.4437 -0.0914 5 6 1.6375 2.1256 1.3085 6 6 2.3385 1.4549 2.4617 7 1 3.0041 0.6241 2.2796 8 6 2.1292 1.9012 3.7494 9 7 1.3183 2.9125 3.9711 10 14 2.9976 1.0693 5.1789 11 1 3.8483 -0.0347 4.6665 12 1 3.8462 2.0609 5.8873 13 1 1.9881 0.5201 6.1194 14 6 1.4280 2.1998 -1.1800 15 1 0.3427 2.2361 -1.0855 16 6 1.8298 1.5346 -2.5127 17 6 1.9716 2.6257 -3.5905 18 6 2.8165 3.7691 -2.9694 19 16 2.1170 3.8934 -1.2780 20 1 -0.3634 0.4588 -0.9196 21 1 -0.3634 -1.0258 0.0626 22 1 -0.3633 0.5671 0.8570 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.5589 2.0461 1.4431 26 1 1.9226 3.1771 1.2720 27 1 1.1713 3.2267 4.8770 28 1 2.7808 1.0161 -2.3906 29 1 1.0625 0.8203 -2.8111 30 1 0.9871 3.0003 -3.8707 31 1 2.4791 2.2212 -4.4662 32 1 2.6729 4.6999 -3.5182 33 1 3.8723 3.5005 -2.9340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -51.339506 kcal Electronic energy + Delta-G solvation = -12847.788618 eV Core-core repulsion = 10804.564991 eV Total energy + Delta-G solvation = -2043.223627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.92106 -35.88126 -34.38841 -30.79193 -29.90416 -26.95512 -24.93493 -24.57026 -21.70024 -20.02289 -18.43756 -17.66794 -16.62904 -16.32084 -15.66242 -15.18960 -14.89560 -14.45915 -14.21649 -13.60240 -13.38906 -13.09104 -12.92269 -12.69679 -12.34942 -12.33238 -12.24426 -12.09426 -11.68668 -11.57748 -11.41848 -10.99959 -10.83097 -10.58272 -10.37210 -8.59291 -8.14644 -6.23105 1.03108 1.38201 1.38879 1.51457 1.68539 2.42293 3.18784 3.71312 3.81720 4.01737 4.13126 4.31534 4.37902 4.43012 4.55121 4.59921 4.77417 4.85599 4.98410 4.99875 5.03328 5.12210 5.18773 5.26720 5.30985 5.51933 5.56335 5.69586 5.86724 5.95721 6.32120 6.93974 7.43994 8.97463 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039480 B = 0.008769 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.055143 B = 3192.303311 C = 3564.625801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.058 4.058 4 H 0.051 0.949 5 C 0.035 3.965 6 C -0.523 4.523 7 H 0.060 0.940 8 C -0.004 4.004 9 N -0.936 5.936 10 Si 0.958 3.042 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.279 1.279 14 C -0.014 4.014 15 H 0.086 0.914 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.064 4.064 19 S -0.382 6.382 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.029 0.971 23 H 0.078 0.922 24 H 0.050 0.950 25 H -0.007 1.007 26 H -0.011 1.011 27 H 0.259 0.741 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -4.541 -15.700 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.078 4.078 4 H 0.070 0.930 5 C -0.002 4.002 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.201 4.201 9 N -0.577 5.577 10 Si 0.783 3.217 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.205 1.205 14 C -0.142 4.142 15 H 0.105 0.895 16 C -0.160 4.160 17 C -0.156 4.156 18 C -0.212 4.212 19 S -0.155 6.155 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.011 0.989 26 H 0.007 0.993 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.939 -3.504 -14.808 15.246 hybrid contribution 0.229 -0.649 0.731 1.004 sum 1.168 -4.153 -14.077 14.724 Atomic orbital electron populations 1.21785 0.96007 1.01433 1.01095 1.21422 0.96223 0.94895 1.01490 1.21154 0.98286 0.95204 0.93151 0.93019 1.19047 0.94761 0.94354 0.92079 1.21658 1.26203 1.15825 0.92391 0.92224 1.25938 0.96270 0.95810 1.02069 1.70135 1.38547 1.27746 1.21256 0.85497 0.78471 0.78627 0.79068 1.18396 1.20866 1.20498 1.23902 1.01336 0.89991 0.98933 0.89537 1.22508 1.03587 0.98990 0.90937 1.22579 1.00720 0.93524 0.98795 1.24354 1.02235 1.03328 0.91281 1.88358 1.75745 1.24886 1.26486 0.91716 0.91785 0.95190 0.90328 0.93133 0.98922 0.99267 0.93175 0.90408 0.87991 0.90198 0.87042 0.87018 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 9.16 71.98 0.66 -4.13 16 2 C -0.10 -3.53 5.28 30.59 0.16 -3.37 16 3 C -0.06 -2.36 1.56 -10.80 -0.02 -2.38 16 4 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 5 C 0.03 1.87 4.22 29.85 0.13 2.00 16 6 C -0.52 -30.26 8.34 25.60 0.21 -30.04 16 7 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 8 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 9 N -0.94 -59.31 13.29 21.45 0.28 -59.03 16 10 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C -0.01 -0.46 2.21 31.02 0.07 -0.39 16 15 H 0.09 3.07 6.59 -2.39 -0.02 3.05 16 16 C -0.12 -2.82 4.93 31.37 0.15 -2.67 16 17 C -0.12 -2.22 6.46 31.68 0.20 -2.02 16 18 C -0.06 -1.53 7.38 72.72 0.54 -1.00 16 19 S -0.38 -14.37 21.46 -56.49 -1.21 -15.58 16 20 H 0.06 1.81 6.59 -2.38 -0.02 1.79 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 22 H 0.03 1.20 6.31 -2.39 -0.02 1.19 16 23 H 0.08 2.15 7.38 -2.39 -0.02 2.13 16 24 H 0.05 2.00 6.82 -2.38 -0.02 1.98 16 25 H -0.01 -0.44 6.28 -2.39 -0.02 -0.45 16 26 H -0.01 -0.67 7.01 -2.39 -0.02 -0.69 16 27 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.08 1.78 7.74 -2.38 -0.02 1.76 16 29 H 0.10 1.93 8.13 -2.39 -0.02 1.91 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.25 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -69.45 267.69 4.73 -64.72 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.06 Total: 5.88 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.57 Total: -43.77 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.28 Total: -59.03 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: -14.37 SS G_CDS: -1.21 Total: -15.58 kcal Total: -69.45 4.73 -64.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.380 kcal (2) G-P(sol) polarization free energy of solvation -69.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds