Wall clock time and date at job start Mon Mar 30 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.57346 * 2 1 4 4 C 1.53265 * 109.57107 * 120.25328 * 2 1 3 5 5 O 1.43087 * 108.94089 * 174.33254 * 4 2 1 6 6 C 1.42965 * 113.77015 * 302.02793 * 5 4 2 7 7 C 1.52998 * 109.47317 * 298.79992 * 6 5 4 8 8 C 1.52996 * 109.47304 * 178.79348 * 6 5 4 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 6 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 O 1.42972 * 109.47238 * 58.79599 * 6 5 4 18 18 C 1.43092 * 113.76770 * 301.20749 * 17 6 5 19 19 H 1.09002 * 109.47058 * 299.75167 * 1 2 3 20 20 H 1.08999 * 109.46705 * 59.74543 * 1 2 3 21 21 H 1.08994 * 109.47239 * 179.74949 * 1 2 3 22 22 H 1.08999 * 109.46527 * 180.25560 * 3 2 1 23 23 H 1.09001 * 109.46776 * 300.25197 * 3 2 1 24 24 H 1.08993 * 109.47234 * 60.25703 * 3 2 1 25 25 H 1.08997 * 109.55654 * 54.49343 * 4 2 1 26 26 H 1.09002 * 109.55381 * 294.16927 * 4 2 1 27 27 H 1.09004 * 109.46610 * 299.99626 * 7 6 5 28 28 H 1.09001 * 109.47486 * 59.99498 * 7 6 5 29 29 H 1.09003 * 109.47277 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47066 * 60.00102 * 8 6 5 31 31 H 1.08994 * 109.47405 * 299.99933 * 8 6 5 32 32 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.56351 * 298.12732 * 18 17 6 34 34 H 1.09001 * 109.64627 * 177.85912 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0435 -0.7276 1.2474 5 8 3.4680 -0.8362 1.1684 6 6 3.9299 -1.5218 0.0019 7 6 3.3885 -2.9528 0.0035 8 6 5.4595 -1.5550 0.0020 9 6 5.9462 -2.2782 -1.2273 10 1 5.2357 -2.6741 -1.9378 11 6 7.2989 -2.4290 -1.4482 12 7 7.7238 -3.0554 -2.5237 13 14 8.5279 -1.7437 -0.2196 14 1 8.8322 -2.7755 0.8041 15 1 9.7772 -1.3654 -0.9278 16 1 7.9513 -0.5454 0.4414 17 8 3.4681 -0.8390 -1.1663 18 6 2.0436 -0.7305 -1.2456 19 1 -0.3633 0.5100 0.8922 20 1 -0.3633 0.5178 -0.8877 21 1 -0.3633 -1.0276 -0.0045 22 1 3.1327 1.4396 -0.0046 23 1 1.6765 1.9574 -0.8877 24 1 1.6841 1.9547 0.8922 25 1 1.6036 -1.7237 1.2957 26 1 1.7694 -0.1622 2.1382 27 1 3.7406 -3.4733 0.8941 28 1 2.2988 -2.9291 0.0035 29 1 3.7410 -3.4756 -0.8856 30 1 5.8115 -2.0756 0.8926 31 1 5.8451 -0.5356 0.0007 32 1 8.6753 -3.1617 -2.6788 33 1 1.6036 -1.7267 -1.2917 34 1 1.7680 -0.1683 -2.1379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260764870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:10 Heat of formation + Delta-G solvation = -106.447963 kcal Electronic energy + Delta-G solvation = -15590.848251 eV Core-core repulsion = 13102.482072 eV Total energy + Delta-G solvation = -2488.366180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.09232 -35.54885 -35.01945 -32.91417 -30.73274 -27.79184 -27.02706 -26.18662 -25.69618 -23.00584 -20.42812 -18.11706 -17.43746 -16.20283 -15.67818 -15.10644 -14.90304 -14.48775 -13.88886 -13.59927 -13.01281 -12.56613 -12.30228 -12.08190 -11.91234 -11.83504 -11.69824 -11.52839 -11.18311 -10.85268 -10.68255 -10.56823 -10.45528 -9.94546 -9.81925 -9.33163 -9.19862 -8.75747 -8.50550 -6.00186 -3.97483 3.34585 3.42206 3.48335 4.25262 4.38666 4.49101 4.71370 4.81463 5.12383 5.32762 5.35703 5.48070 5.59562 5.66384 5.68167 5.72597 5.85268 5.91960 5.95084 6.10473 6.16314 6.21451 6.29352 6.53257 6.62597 6.83894 7.05834 7.15429 7.61753 7.71183 8.06186 8.56247 9.05173 9.60126 11.12624 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.008942 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.961495 B = 3130.640119 C = 3233.858673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.130 4.130 4 C 0.066 3.934 5 O -0.391 6.391 6 C 0.281 3.719 7 C -0.191 4.191 8 C 0.013 3.987 9 C -0.505 4.505 10 H 0.080 0.920 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.264 1.264 17 O -0.359 6.359 18 C 0.061 3.939 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 4.972 6.171 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.138 4.138 3 C -0.187 4.187 4 C -0.011 4.011 5 O -0.312 6.312 6 C 0.206 3.794 7 C -0.249 4.249 8 C -0.025 4.025 9 C -0.543 4.543 10 H 0.098 0.902 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.701 3.299 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.188 1.188 17 O -0.279 6.279 18 C -0.016 4.016 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.714 5.055 6.069 14.968 hybrid contribution 0.242 0.102 0.555 0.614 sum -12.472 5.157 6.624 15.034 Atomic orbital electron populations 1.21729 0.93951 1.01728 1.02015 1.21807 0.96141 0.97921 0.97942 1.21680 1.02780 0.93539 1.00705 1.22596 0.82795 0.98773 0.96927 1.88161 1.19890 1.78594 1.44571 1.22982 0.96114 0.86351 0.73963 1.22723 0.99200 0.98172 1.04758 1.19480 0.85758 0.98614 0.98620 1.20889 0.92715 1.35145 1.05553 0.90204 1.24927 0.98214 0.94854 0.95277 1.69892 1.14803 1.42764 1.26615 0.86862 0.81022 0.80293 0.81709 1.20252 1.21281 1.18830 1.88348 1.18692 1.77852 1.43013 1.22637 0.83566 0.98685 0.96733 0.92421 0.92267 0.92672 0.91155 0.92981 0.93186 0.93233 0.89536 0.91502 0.93886 0.89179 0.94930 0.95057 0.92717 0.93317 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.50 37.16 0.32 -1.12 16 2 C -0.14 -1.93 0.79 -154.23 -0.12 -2.05 16 3 C -0.13 -1.83 8.30 37.16 0.31 -1.52 16 4 C 0.07 1.00 5.27 37.29 0.20 1.20 16 5 O -0.39 -7.78 9.89 -59.03 -0.58 -8.36 16 6 C 0.28 6.12 1.14 -26.73 -0.03 6.09 16 7 C -0.19 -3.73 7.85 37.16 0.29 -3.43 16 8 C 0.01 0.32 3.69 -27.88 -0.10 0.22 16 9 C -0.51 -14.50 8.60 -34.44 -0.30 -14.80 16 10 H 0.08 2.46 6.91 -52.49 -0.36 2.10 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 13 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 17 O -0.36 -7.85 9.47 -59.03 -0.56 -8.41 16 18 C 0.06 1.01 5.28 37.29 0.20 1.20 16 19 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.71 5.11 -51.93 -0.27 0.44 16 29 H 0.09 1.93 6.62 -51.93 -0.34 1.59 16 30 H 0.03 0.80 7.58 -51.93 -0.39 0.41 16 31 H 0.03 0.82 7.19 -51.93 -0.37 0.45 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.05 0.76 6.53 -51.93 -0.34 0.42 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -31.28 263.83 -5.76 -37.04 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.35 Total: -2.12 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 0.66 Total: -12.31 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -1.14 Total: -16.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.28 -5.76 -37.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260764870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.411 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds