Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.57346 * 2 1 4 4 C 1.53265 * 109.57107 * 120.25328 * 2 1 3 5 5 O 1.43087 * 108.94089 * 174.33254 * 4 2 1 6 6 C 1.42965 * 113.77015 * 302.02793 * 5 4 2 7 7 C 1.52998 * 109.47317 * 298.79992 * 6 5 4 8 8 C 1.52996 * 109.47304 * 178.79348 * 6 5 4 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 6 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 O 1.42972 * 109.47238 * 58.79599 * 6 5 4 18 18 C 1.43092 * 113.76770 * 301.20749 * 17 6 5 19 19 H 1.09002 * 109.47058 * 299.75167 * 1 2 3 20 20 H 1.08999 * 109.46705 * 59.74543 * 1 2 3 21 21 H 1.08994 * 109.47239 * 179.74949 * 1 2 3 22 22 H 1.08999 * 109.46527 * 180.25560 * 3 2 1 23 23 H 1.09001 * 109.46776 * 300.25197 * 3 2 1 24 24 H 1.08993 * 109.47234 * 60.25703 * 3 2 1 25 25 H 1.08997 * 109.55654 * 54.49343 * 4 2 1 26 26 H 1.09002 * 109.55381 * 294.16927 * 4 2 1 27 27 H 1.09004 * 109.46610 * 299.99626 * 7 6 5 28 28 H 1.09001 * 109.47486 * 59.99498 * 7 6 5 29 29 H 1.09003 * 109.47277 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47066 * 60.00102 * 8 6 5 31 31 H 1.08994 * 109.47405 * 299.99933 * 8 6 5 32 32 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.56351 * 298.12732 * 18 17 6 34 34 H 1.09001 * 109.64627 * 177.85912 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0435 -0.7276 1.2474 5 8 3.4680 -0.8362 1.1684 6 6 3.9299 -1.5218 0.0019 7 6 3.3885 -2.9528 0.0035 8 6 5.4595 -1.5550 0.0020 9 6 5.9462 -2.2782 -1.2273 10 1 5.2357 -2.6741 -1.9378 11 6 7.2989 -2.4290 -1.4482 12 7 7.7238 -3.0554 -2.5237 13 14 8.5279 -1.7437 -0.2196 14 1 8.8322 -2.7755 0.8041 15 1 9.7772 -1.3654 -0.9278 16 1 7.9513 -0.5454 0.4414 17 8 3.4681 -0.8390 -1.1663 18 6 2.0436 -0.7305 -1.2456 19 1 -0.3633 0.5100 0.8922 20 1 -0.3633 0.5178 -0.8877 21 1 -0.3633 -1.0276 -0.0045 22 1 3.1327 1.4396 -0.0046 23 1 1.6765 1.9574 -0.8877 24 1 1.6841 1.9547 0.8922 25 1 1.6036 -1.7237 1.2957 26 1 1.7694 -0.1622 2.1382 27 1 3.7406 -3.4733 0.8941 28 1 2.2988 -2.9291 0.0035 29 1 3.7410 -3.4756 -0.8856 30 1 5.8115 -2.0756 0.8926 31 1 5.8451 -0.5356 0.0007 32 1 8.6753 -3.1617 -2.6788 33 1 1.6036 -1.7267 -1.2917 34 1 1.7680 -0.1683 -2.1379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260764870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -127.300540 kcal Electronic energy + Delta-G solvation = -15591.752487 eV Core-core repulsion = 13102.482072 eV Total energy + Delta-G solvation = -2489.270415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.50836 -36.89732 -36.51808 -34.96475 -32.59961 -29.49382 -28.12690 -27.48887 -26.98937 -24.84681 -22.08530 -19.40846 -19.30390 -18.03536 -17.22649 -16.38290 -16.33124 -16.16980 -15.60341 -14.89656 -14.54974 -14.34663 -13.70043 -13.50717 -13.30732 -13.14943 -13.10277 -12.89459 -12.74578 -12.48468 -12.18296 -12.03529 -11.89399 -11.78930 -11.52291 -11.35957 -10.76281 -10.59576 -10.27637 -8.26733 -6.29298 1.35189 1.37747 1.50122 2.36899 2.81230 2.88123 3.11567 3.60990 3.71232 3.91964 4.05083 4.14210 4.28983 4.45946 4.55807 4.64359 4.74488 4.79780 4.83191 4.88872 4.97019 5.01511 5.10838 5.14239 5.16614 5.23233 5.31937 5.46707 5.57497 6.11076 6.26710 6.53754 6.75833 7.31914 8.89259 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.008942 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.961495 B = 3130.640119 C = 3233.858673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C -0.128 4.128 4 C 0.055 3.945 5 O -0.408 6.408 6 C 0.284 3.716 7 C -0.182 4.182 8 C 0.012 3.988 9 C -0.506 4.506 10 H 0.044 0.956 11 C 0.009 3.991 12 N -0.947 5.947 13 Si 0.942 3.058 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.256 1.256 17 O -0.397 6.397 18 C 0.049 3.951 19 H 0.076 0.924 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.057 0.943 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 5.817 7.978 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.185 4.185 4 C -0.021 4.021 5 O -0.329 6.329 6 C 0.208 3.792 7 C -0.240 4.240 8 C -0.025 4.025 9 C -0.544 4.544 10 H 0.062 0.938 11 C -0.188 4.188 12 N -0.588 5.588 13 Si 0.765 3.235 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.180 1.180 17 O -0.318 6.318 18 C -0.027 4.027 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.339 5.901 7.887 17.397 hybrid contribution 0.625 -0.139 -0.064 0.644 sum -13.714 5.762 7.823 16.807 Atomic orbital electron populations 1.21689 0.90642 1.02856 1.03496 1.21789 0.98602 0.97028 0.95875 1.21660 1.00236 0.94250 1.02361 1.22993 0.80265 1.00255 0.98589 1.88094 1.23028 1.78459 1.43317 1.22550 0.94131 0.87623 0.74882 1.22592 1.01153 0.96600 1.03628 1.19352 0.89176 0.97013 0.96990 1.21033 0.92360 1.34871 1.06120 0.93788 1.25834 1.00420 0.95241 0.97304 1.70031 1.15483 1.44463 1.28774 0.85785 0.78235 0.80053 0.79395 1.18594 1.20686 1.18031 1.88270 1.22109 1.78153 1.43267 1.22976 0.81001 0.99876 0.98823 0.90553 0.91256 0.91759 0.95037 0.91870 0.91052 0.91872 0.86955 0.90802 0.90735 0.92007 0.94253 0.96482 0.92437 0.92484 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.50 71.99 0.61 -1.57 16 2 C -0.13 -3.35 0.79 -52.00 -0.04 -3.39 16 3 C -0.13 -3.34 8.30 71.98 0.60 -2.75 16 4 C 0.05 1.50 5.27 72.07 0.38 1.88 16 5 O -0.41 -15.64 9.89 -126.22 -1.25 -16.89 16 6 C 0.28 12.33 1.14 30.59 0.04 12.36 16 7 C -0.18 -7.02 7.85 71.98 0.57 -6.45 16 8 C 0.01 0.62 3.69 29.85 0.11 0.73 16 9 C -0.51 -29.97 8.60 25.60 0.22 -29.75 16 10 H 0.04 2.85 6.91 -2.91 -0.02 2.83 16 11 C 0.01 0.53 5.47 84.66 0.46 0.99 16 12 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 13 Si 0.94 45.68 27.47 68.60 1.88 47.56 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 17 O -0.40 -17.54 9.47 -126.22 -1.20 -18.74 16 18 C 0.05 1.56 5.28 72.07 0.38 1.94 16 19 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.03 1.06 7.49 -2.39 -0.02 1.04 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.56 6.53 -2.39 -0.02 1.54 16 26 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 28 H 0.07 2.33 5.11 -2.39 -0.01 2.32 16 29 H 0.06 2.72 6.62 -2.39 -0.02 2.70 16 30 H 0.04 1.93 7.58 -2.38 -0.02 1.91 16 31 H 0.02 0.90 7.19 -2.39 -0.02 0.88 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.06 1.67 6.53 -2.39 -0.02 1.66 16 34 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -69.33 263.83 4.07 -65.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.01 Total: 8.64 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 3.32 Total: -25.99 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.30 Total: -59.85 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -2.44 Total: -35.63 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -69.33 4.07 -65.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260764870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.039 kcal (2) G-P(sol) polarization free energy of solvation -69.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds