Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47648 * 305.01994 * 3 2 1 5 5 C 1.53089 * 109.47969 * 185.00114 * 3 2 1 6 6 C 1.53176 * 109.16219 * 182.39504 * 5 3 2 7 7 H 1.09004 * 109.54565 * 297.11436 * 6 5 3 8 8 O 1.42899 * 109.54818 * 176.84914 * 6 5 3 9 9 C 1.53175 * 109.03666 * 56.97677 * 6 5 3 10 10 H 1.09004 * 109.52259 * 62.92651 * 9 6 5 11 11 C 1.53007 * 109.52392 * 183.11464 * 9 6 5 12 12 C 1.50706 * 109.46765 * 185.00158 * 11 9 6 13 13 H 1.07999 * 120.00243 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99275 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99605 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00388 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47249 * 89.99531 * 16 14 12 18 18 H 1.48498 * 109.46798 * 209.99603 * 16 14 12 19 19 H 1.48498 * 109.46832 * 329.99524 * 16 14 12 20 20 C 1.53094 * 109.16661 * 303.02385 * 9 6 5 21 21 O 1.42897 * 109.49063 * 65.05101 * 3 2 1 22 22 H 1.09003 * 109.47295 * 60.00078 * 1 2 3 23 23 H 1.09002 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47412 * 300.00014 * 1 2 3 25 25 H 1.08997 * 109.47412 * 239.99986 * 2 1 3 26 26 H 1.09003 * 109.47295 * 119.99922 * 2 1 3 27 27 H 1.08997 * 109.52675 * 62.49297 * 5 3 2 28 28 H 1.08994 * 109.57561 * 302.33003 * 5 3 2 29 29 H 0.96696 * 113.99740 * 59.99289 * 8 6 5 30 30 H 1.09000 * 109.46977 * 305.00045 * 11 9 6 31 31 H 1.08997 * 109.46690 * 65.00287 * 11 9 6 32 32 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.47665 * 297.62062 * 20 9 6 34 34 H 1.09002 * 109.48937 * 177.59283 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0649 7 1 3.6790 3.4498 -0.9121 8 8 5.5016 2.8955 -0.1079 9 6 3.5967 3.5309 1.2415 10 1 4.0312 2.9996 2.0883 11 6 4.0317 4.9974 1.2786 12 6 3.6707 5.5947 2.6143 13 1 3.1805 4.9889 3.3620 14 6 3.9673 6.9144 2.8820 15 7 3.6528 7.4355 4.0478 16 14 4.8159 7.9619 1.5890 17 1 3.7936 8.6228 0.7384 18 1 5.6473 8.9953 2.2568 19 1 5.6812 7.1004 0.7439 20 6 2.0698 3.4482 1.3145 21 8 1.6632 2.0815 1.2214 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8709 0.6927 29 1 5.8729 2.4966 -0.9066 30 1 5.1100 5.0603 1.1319 31 1 3.5244 5.5470 0.4857 32 1 3.8610 8.3640 4.2361 33 1 1.6353 4.0138 0.4901 34 1 1.7279 3.8655 2.2617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260770068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -122.664039 kcal Electronic energy + Delta-G solvation = -15024.753656 eV Core-core repulsion = 12535.684294 eV Total energy + Delta-G solvation = -2489.069362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48217 -36.40503 -34.37310 -33.13175 -31.77186 -30.31056 -27.16662 -24.45985 -23.77536 -21.38219 -20.77112 -19.53687 -17.00524 -16.76504 -16.14621 -15.29806 -14.69087 -14.39027 -13.77720 -13.56783 -13.44113 -12.81149 -12.73486 -12.45954 -12.16760 -11.82309 -11.53194 -11.16739 -11.01570 -10.86822 -10.61906 -10.27426 -10.13979 -9.94082 -9.61529 -9.38832 -9.09581 -8.91503 -8.49880 -6.01449 -3.99158 3.32849 3.40715 3.47319 4.11801 4.48783 4.50753 4.80580 5.03492 5.11697 5.23203 5.32555 5.38616 5.48347 5.52366 5.62941 5.82102 5.89314 5.92725 6.02500 6.12007 6.17357 6.23113 6.33759 6.57783 6.73941 6.82573 7.30362 7.47158 7.67882 7.81314 7.98951 8.55502 9.02764 9.61337 11.11688 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.008089 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.456821 B = 3460.559425 C = 3904.048871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.053 0.947 5 C -0.181 4.181 6 C 0.104 3.896 7 H 0.048 0.952 8 O -0.555 6.555 9 C -0.097 4.097 10 H 0.078 0.922 11 C -0.005 4.005 12 C -0.520 4.520 13 H 0.074 0.926 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.076 3.924 21 O -0.383 6.383 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.365 0.635 30 H 0.030 0.970 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.044 0.956 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -12.505 -11.261 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.034 3.966 4 H 0.071 0.929 5 C -0.219 4.219 6 C 0.045 3.955 7 H 0.066 0.934 8 O -0.359 6.359 9 C -0.116 4.116 10 H 0.097 0.903 11 C -0.042 4.042 12 C -0.558 4.558 13 H 0.092 0.908 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.188 1.188 20 C 0.000 4.000 21 O -0.302 6.302 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.210 0.790 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.787 -12.134 -10.419 16.235 hybrid contribution 0.730 0.583 -1.383 1.669 sum -2.057 -11.552 -11.802 16.643 Atomic orbital electron populations 1.21713 0.95364 1.01139 1.02446 1.21529 0.96626 0.94738 1.02317 1.21989 0.92654 0.93886 0.88064 0.92916 1.22989 0.97412 0.99013 1.02504 1.22027 0.80753 0.93521 0.99198 0.93355 1.86672 1.20072 1.83824 1.45317 1.21685 0.95359 0.99497 0.95078 0.90332 1.19526 0.97241 0.90012 0.97416 1.21158 1.39244 0.96338 0.99042 0.90801 1.25009 0.95239 0.97908 0.95210 1.69916 1.48005 1.14176 1.22127 0.86808 0.80245 0.80258 0.82232 1.20416 1.21416 1.18845 1.22741 0.93453 0.80498 1.03320 1.87907 1.78599 1.26216 1.37481 0.93101 0.93083 0.91653 0.91195 0.91157 0.91630 0.90384 0.78975 0.95220 0.97381 0.92784 0.93788 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 37.15 0.36 -1.24 16 2 C -0.11 -1.31 5.64 -26.73 -0.15 -1.46 16 3 C 0.09 1.29 2.64 -26.68 -0.07 1.22 16 4 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.18 -2.51 5.05 -26.59 -0.13 -2.64 16 6 C 0.10 1.75 2.96 -26.55 -0.08 1.68 16 7 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 8 O -0.56 -9.45 12.72 -35.23 -0.45 -9.90 16 9 C -0.10 -2.02 2.06 -90.48 -0.19 -2.20 16 10 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 11 C 0.00 -0.11 3.46 -27.88 -0.10 -0.21 16 12 C -0.52 -14.89 9.00 -34.44 -0.31 -15.20 16 13 H 0.07 2.25 7.33 -52.49 -0.38 1.87 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 16 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 20 C 0.08 1.46 5.90 37.21 0.22 1.68 16 21 O -0.38 -6.69 9.94 -35.23 -0.35 -7.04 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.36 4.17 9.08 45.56 0.41 4.59 16 30 H 0.03 0.77 6.70 -51.93 -0.35 0.42 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.11 2.38 7.05 -51.93 -0.37 2.01 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -32.00 272.12 -6.01 -38.02 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.88 Total: 1.14 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.54 Total: -16.49 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.80 Total: -16.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.00 -6.01 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.648 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds