Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47648 * 305.01994 * 3 2 1 5 5 C 1.53089 * 109.47969 * 185.00114 * 3 2 1 6 6 C 1.53176 * 109.16219 * 182.39504 * 5 3 2 7 7 H 1.09004 * 109.54565 * 297.11436 * 6 5 3 8 8 O 1.42899 * 109.54818 * 176.84914 * 6 5 3 9 9 C 1.53175 * 109.03666 * 56.97677 * 6 5 3 10 10 H 1.09004 * 109.52259 * 62.92651 * 9 6 5 11 11 C 1.53007 * 109.52392 * 183.11464 * 9 6 5 12 12 C 1.50706 * 109.46765 * 185.00158 * 11 9 6 13 13 H 1.07999 * 120.00243 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99275 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99605 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00388 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47249 * 89.99531 * 16 14 12 18 18 H 1.48498 * 109.46798 * 209.99603 * 16 14 12 19 19 H 1.48498 * 109.46832 * 329.99524 * 16 14 12 20 20 C 1.53094 * 109.16661 * 303.02385 * 9 6 5 21 21 O 1.42897 * 109.49063 * 65.05101 * 3 2 1 22 22 H 1.09003 * 109.47295 * 60.00078 * 1 2 3 23 23 H 1.09002 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47412 * 300.00014 * 1 2 3 25 25 H 1.08997 * 109.47412 * 239.99986 * 2 1 3 26 26 H 1.09003 * 109.47295 * 119.99922 * 2 1 3 27 27 H 1.08997 * 109.52675 * 62.49297 * 5 3 2 28 28 H 1.08994 * 109.57561 * 302.33003 * 5 3 2 29 29 H 0.96696 * 113.99740 * 59.99289 * 8 6 5 30 30 H 1.09000 * 109.46977 * 305.00045 * 11 9 6 31 31 H 1.08997 * 109.46690 * 65.00287 * 11 9 6 32 32 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.47665 * 297.62062 * 20 9 6 34 34 H 1.09002 * 109.48937 * 177.59283 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0649 7 1 3.6790 3.4498 -0.9121 8 8 5.5016 2.8955 -0.1079 9 6 3.5967 3.5309 1.2415 10 1 4.0312 2.9996 2.0883 11 6 4.0317 4.9974 1.2786 12 6 3.6707 5.5947 2.6143 13 1 3.1805 4.9889 3.3620 14 6 3.9673 6.9144 2.8820 15 7 3.6528 7.4355 4.0478 16 14 4.8159 7.9619 1.5890 17 1 3.7936 8.6228 0.7384 18 1 5.6473 8.9953 2.2568 19 1 5.6812 7.1004 0.7439 20 6 2.0698 3.4482 1.3145 21 8 1.6632 2.0815 1.2214 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8709 0.6927 29 1 5.8729 2.4966 -0.9066 30 1 5.1100 5.0603 1.1319 31 1 3.5244 5.5470 0.4857 32 1 3.8610 8.3640 4.2361 33 1 1.6353 4.0138 0.4901 34 1 1.7279 3.8655 2.2617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -146.500703 kcal Electronic energy + Delta-G solvation = -15025.787291 eV Core-core repulsion = 12535.684294 eV Total energy + Delta-G solvation = -2490.102997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81793 -37.70387 -35.95975 -34.63958 -33.59284 -31.57484 -28.93443 -25.74396 -25.39137 -22.83233 -21.98601 -21.08771 -18.96949 -18.24840 -17.41940 -16.71894 -16.39433 -15.87392 -15.10656 -14.88718 -14.81407 -14.47846 -14.10968 -14.02176 -13.54267 -13.31703 -13.01572 -12.72301 -12.31374 -12.06028 -11.89784 -11.87971 -11.83446 -11.61331 -11.35428 -10.94856 -10.78651 -10.75065 -10.35661 -8.29172 -6.32696 1.33176 1.36630 1.49332 2.35852 2.85371 3.06681 3.31919 3.67940 3.84396 3.94496 4.13389 4.21167 4.32241 4.39531 4.48933 4.56924 4.69815 4.79301 4.86521 4.97458 4.99465 5.11769 5.14910 5.18401 5.29796 5.40300 5.48529 5.52786 5.66591 6.27032 6.35625 6.73674 6.98909 7.31449 8.87392 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.008089 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.456821 B = 3460.559425 C = 3904.048871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.080 3.920 4 H 0.067 0.933 5 C -0.170 4.170 6 C 0.108 3.892 7 H 0.065 0.935 8 O -0.578 6.578 9 C -0.098 4.098 10 H 0.047 0.953 11 C 0.003 3.997 12 C -0.528 4.528 13 H 0.035 0.965 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.948 3.052 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.253 1.253 20 C 0.087 3.913 21 O -0.397 6.397 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.391 0.609 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.057 0.943 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -13.441 -14.479 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.208 4.208 6 C 0.049 3.951 7 H 0.082 0.918 8 O -0.386 6.386 9 C -0.117 4.117 10 H 0.065 0.935 11 C -0.034 4.034 12 C -0.566 4.566 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.772 3.228 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.177 1.177 20 C 0.010 3.990 21 O -0.316 6.316 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.240 0.760 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.390 -13.103 -13.662 19.080 hybrid contribution 0.585 0.786 -0.321 1.031 sum -1.805 -12.317 -13.984 18.722 Atomic orbital electron populations 1.21711 0.95069 1.02140 1.01726 1.21568 0.96884 0.92918 1.03439 1.22385 0.93147 0.95297 0.86866 0.91465 1.22906 0.96841 0.96784 1.04262 1.21883 0.81064 0.95346 0.96776 0.91753 1.86605 1.20060 1.84500 1.47467 1.21579 0.96315 0.97045 0.96799 0.93455 1.19398 0.96463 0.92515 0.95065 1.21457 1.38532 0.96330 1.00268 0.94716 1.25983 0.96090 0.99471 0.97594 1.70068 1.49680 1.14838 1.24506 0.85683 0.79435 0.78324 0.79388 1.18676 1.20943 1.17655 1.22386 0.92499 0.81961 1.02141 1.87897 1.78701 1.25074 1.39949 0.92191 0.91279 0.94008 0.88014 0.92023 0.87402 0.91701 0.75961 0.96327 0.96183 0.92516 0.92435 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.81 71.98 0.71 -2.14 16 2 C -0.11 -2.18 5.64 30.59 0.17 -2.01 16 3 C 0.08 2.04 2.64 30.63 0.08 2.12 16 4 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.17 -4.16 5.05 30.68 0.15 -4.00 16 6 C 0.11 3.39 2.96 30.71 0.09 3.48 16 7 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 8 O -0.58 -18.26 12.72 -148.98 -1.89 -20.16 16 9 C -0.10 -4.10 2.06 -10.70 -0.02 -4.13 16 10 H 0.05 2.22 8.14 -2.38 -0.02 2.21 16 11 C 0.00 0.15 3.46 29.85 0.10 0.25 16 12 C -0.53 -31.33 9.00 25.60 0.23 -31.10 16 13 H 0.03 2.26 7.33 -2.91 -0.02 2.24 16 14 C 0.01 0.32 5.47 84.66 0.46 0.78 16 15 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 16 Si 0.95 45.62 27.47 68.60 1.88 47.51 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 20 C 0.09 3.39 5.90 72.01 0.42 3.81 16 21 O -0.40 -13.75 9.94 -148.98 -1.48 -15.23 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 0.98 7.83 -2.39 -0.02 0.96 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.39 7.51 9.08 -74.06 -0.67 6.84 16 30 H 0.02 0.95 6.70 -2.39 -0.02 0.93 16 31 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.08 3.59 7.05 -2.39 -0.02 3.57 16 Total: -1.00 -71.32 272.12 1.55 -69.77 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.34 Total: 11.62 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 2.40 Total: -32.93 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -3.38 Total: -35.39 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.51 kcal Total: -71.32 1.55 -69.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.732 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds