Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 H 1.09000 * 109.48084 * 304.96798 * 3 2 1 5 5 C 1.53097 * 109.48979 * 184.94700 * 3 2 1 6 6 C 1.53178 * 109.16320 * 182.39939 * 5 3 2 7 7 H 1.08996 * 109.54349 * 297.11136 * 6 5 3 8 8 O 1.42899 * 109.54128 * 176.93706 * 6 5 3 9 9 C 1.53207 * 109.03992 * 56.98185 * 6 5 3 10 10 H 1.08999 * 109.53319 * 183.11811 * 9 6 5 11 11 C 1.52994 * 109.51920 * 62.92423 * 9 6 5 12 12 C 1.50703 * 109.47027 * 175.33154 * 11 9 6 13 13 H 1.08007 * 119.99772 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31511 * 119.99504 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47016 * 60.00214 * 16 14 12 18 18 H 1.48501 * 109.46822 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46952 * 299.99878 * 16 14 12 20 20 C 1.53092 * 109.14859 * 303.02293 * 9 6 5 21 21 O 1.42898 * 109.48327 * 64.99723 * 3 2 1 22 22 H 1.09009 * 109.46779 * 60.00334 * 1 2 3 23 23 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47291 * 300.00782 * 1 2 3 25 25 H 1.08999 * 109.47291 * 239.99218 * 2 1 3 26 26 H 1.08999 * 109.46749 * 119.99631 * 2 1 3 27 27 H 1.09003 * 109.51867 * 302.30802 * 5 3 2 28 28 H 1.09005 * 109.52093 * 62.42787 * 5 3 2 29 29 H 0.96700 * 114.00491 * 59.99772 * 8 6 5 30 30 H 1.08997 * 109.47018 * 295.32481 * 11 9 6 31 31 H 1.08996 * 109.47676 * 55.32788 * 11 9 6 32 32 H 0.97007 * 119.99841 * 180.02562 * 15 14 12 33 33 H 1.09002 * 109.48343 * 297.61643 * 20 9 6 34 34 H 1.08999 * 109.47546 * 177.59237 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9815 -0.8421 5 6 3.5659 1.4447 -0.1245 6 6 4.0732 2.8887 -0.0634 7 1 3.6797 3.4496 -0.9111 8 8 5.5015 2.8958 -0.1072 9 6 3.5955 3.5315 1.2427 10 1 3.9052 4.5763 1.2693 11 6 4.2044 2.7861 2.4319 12 6 3.8270 3.4876 3.7112 13 1 3.2138 4.3762 3.6791 14 6 4.2637 2.9947 4.9225 15 7 5.0091 1.9119 4.9616 16 14 3.7964 3.8648 6.5081 17 1 2.3178 3.8885 6.6425 18 1 4.3863 3.1405 7.6625 19 1 4.3134 5.2566 6.4798 20 6 2.0685 3.4485 1.3141 21 8 1.6621 2.0816 1.2209 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9990 0.8714 0.6952 28 1 3.8545 0.9961 -1.0751 29 1 5.8726 2.4972 -0.9063 30 1 3.8257 1.7642 2.4527 31 1 5.2898 2.7693 2.3333 32 1 5.3160 1.5649 5.8138 33 1 1.6347 4.0138 0.4893 34 1 1.7258 3.8659 2.2609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260770071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = -120.595832 kcal Electronic energy + Delta-G solvation = -15302.926463 eV Core-core repulsion = 12813.946786 eV Total energy + Delta-G solvation = -2488.979677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40796 -36.19328 -34.09398 -32.92114 -31.56563 -29.80861 -26.78022 -24.36975 -23.60990 -22.11320 -20.89274 -18.43164 -16.76562 -16.40661 -15.85771 -15.22851 -14.50468 -14.37589 -13.99262 -13.49887 -13.26685 -12.66030 -12.44329 -12.04910 -11.70822 -11.66661 -11.30312 -10.84756 -10.80944 -10.74724 -10.52272 -10.28707 -10.10227 -9.77546 -9.65437 -9.01145 -8.87550 -8.70706 -8.19315 -5.86803 -3.87459 3.40315 3.44235 3.46433 4.31876 4.55442 4.70980 4.98109 5.23813 5.35779 5.41254 5.48765 5.56542 5.62775 5.64334 5.80444 5.86359 6.05128 6.08654 6.14930 6.33569 6.39082 6.46875 6.55601 6.66427 6.79620 7.18565 7.80154 7.92127 8.05664 8.12446 8.18720 8.55098 9.18488 9.74032 11.24645 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.009787 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.162106 B = 2860.154184 C = 3317.579686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.095 3.905 4 H 0.046 0.954 5 C -0.182 4.182 6 C 0.109 3.891 7 H 0.037 0.963 8 O -0.553 6.553 9 C -0.114 4.114 10 H 0.070 0.930 11 C 0.039 3.961 12 C -0.515 4.515 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.080 3.920 21 O -0.364 6.364 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.363 0.637 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -1.514 -12.040 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.064 0.936 5 C -0.220 4.220 6 C 0.051 3.949 7 H 0.055 0.945 8 O -0.356 6.356 9 C -0.132 4.132 10 H 0.088 0.912 11 C 0.002 3.998 12 C -0.553 4.553 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.004 3.996 21 O -0.283 6.283 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.208 0.792 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.785 -1.434 -11.178 12.668 hybrid contribution 0.082 0.333 0.134 0.369 sum -5.704 -1.101 -11.043 12.478 Atomic orbital electron populations 1.21703 0.95588 1.01041 1.02144 1.21522 0.96366 0.94932 1.02518 1.21941 0.92833 0.93843 0.87708 0.93580 1.22976 0.97340 0.99028 1.02678 1.21902 0.80783 0.94257 0.98008 0.94487 1.86703 1.20049 1.83653 1.45201 1.21907 0.95283 1.00761 0.95279 0.91199 1.18983 0.96133 0.95354 0.89310 1.21206 1.31566 1.11019 0.91536 0.93053 1.24970 0.95348 0.95072 0.98918 1.69965 1.35880 1.22065 1.25482 0.86733 0.78692 0.79669 0.83321 1.20322 1.21410 1.20423 1.22566 0.93719 0.81983 1.01339 1.87977 1.77823 1.25269 1.37210 0.93399 0.93167 0.91665 0.91345 0.90749 0.89114 0.92159 0.79192 0.95690 0.95759 0.93179 0.95469 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.81 37.16 0.36 -1.49 16 2 C -0.12 -1.62 5.64 -26.73 -0.15 -1.77 16 3 C 0.10 1.53 2.64 -26.68 -0.07 1.46 16 4 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.18 -3.02 4.68 -26.59 -0.12 -3.14 16 6 C 0.11 1.96 3.24 -26.53 -0.09 1.88 16 7 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 8 O -0.55 -10.19 12.47 -35.23 -0.44 -10.63 16 9 C -0.11 -2.44 2.40 -90.47 -0.22 -2.65 16 10 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 11 C 0.04 1.05 3.87 -27.88 -0.11 0.94 16 12 C -0.51 -14.90 8.38 -34.44 -0.29 -15.18 16 13 H 0.05 1.42 7.07 -52.48 -0.37 1.05 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 16 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.08 1.57 6.10 37.20 0.23 1.79 16 21 O -0.36 -7.22 9.28 -35.23 -0.33 -7.55 16 22 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.80 6.73 -51.93 -0.35 1.45 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.36 4.64 9.08 45.56 0.41 5.06 16 30 H 0.02 0.72 6.26 -51.93 -0.32 0.39 16 31 H 0.02 0.72 7.47 -51.93 -0.39 0.33 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.11 2.20 6.89 -51.93 -0.36 1.84 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -32.71 271.04 -6.24 -38.95 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.72 Total: 1.49 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.55 Total: -16.57 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.74 Total: -27.06 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.77 Total: -18.17 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.71 -6.24 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.648 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds