Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 H 1.09000 * 109.48084 * 304.96798 * 3 2 1 5 5 C 1.53097 * 109.48979 * 184.94700 * 3 2 1 6 6 C 1.53178 * 109.16320 * 182.39939 * 5 3 2 7 7 H 1.08996 * 109.54349 * 297.11136 * 6 5 3 8 8 O 1.42899 * 109.54128 * 176.93706 * 6 5 3 9 9 C 1.53207 * 109.03992 * 56.98185 * 6 5 3 10 10 H 1.08999 * 109.53319 * 183.11811 * 9 6 5 11 11 C 1.52994 * 109.51920 * 62.92423 * 9 6 5 12 12 C 1.50703 * 109.47027 * 175.33154 * 11 9 6 13 13 H 1.08007 * 119.99772 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31511 * 119.99504 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47016 * 60.00214 * 16 14 12 18 18 H 1.48501 * 109.46822 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46952 * 299.99878 * 16 14 12 20 20 C 1.53092 * 109.14859 * 303.02293 * 9 6 5 21 21 O 1.42898 * 109.48327 * 64.99723 * 3 2 1 22 22 H 1.09009 * 109.46779 * 60.00334 * 1 2 3 23 23 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47291 * 300.00782 * 1 2 3 25 25 H 1.08999 * 109.47291 * 239.99218 * 2 1 3 26 26 H 1.08999 * 109.46749 * 119.99631 * 2 1 3 27 27 H 1.09003 * 109.51867 * 302.30802 * 5 3 2 28 28 H 1.09005 * 109.52093 * 62.42787 * 5 3 2 29 29 H 0.96700 * 114.00491 * 59.99772 * 8 6 5 30 30 H 1.08997 * 109.47018 * 295.32481 * 11 9 6 31 31 H 1.08996 * 109.47676 * 55.32788 * 11 9 6 32 32 H 0.97007 * 119.99841 * 180.02562 * 15 14 12 33 33 H 1.09002 * 109.48343 * 297.61643 * 20 9 6 34 34 H 1.08999 * 109.47546 * 177.59237 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9815 -0.8421 5 6 3.5659 1.4447 -0.1245 6 6 4.0732 2.8887 -0.0634 7 1 3.6797 3.4496 -0.9111 8 8 5.5015 2.8958 -0.1072 9 6 3.5955 3.5315 1.2427 10 1 3.9052 4.5763 1.2693 11 6 4.2044 2.7861 2.4319 12 6 3.8270 3.4876 3.7112 13 1 3.2138 4.3762 3.6791 14 6 4.2637 2.9947 4.9225 15 7 5.0091 1.9119 4.9616 16 14 3.7964 3.8648 6.5081 17 1 2.3178 3.8885 6.6425 18 1 4.3863 3.1405 7.6625 19 1 4.3134 5.2566 6.4798 20 6 2.0685 3.4485 1.3141 21 8 1.6621 2.0816 1.2209 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9990 0.8714 0.6952 28 1 3.8545 0.9961 -1.0751 29 1 5.8726 2.4972 -0.9063 30 1 3.8257 1.7642 2.4527 31 1 5.2898 2.7693 2.3333 32 1 5.3160 1.5649 5.8138 33 1 1.6347 4.0138 0.4893 34 1 1.7258 3.8659 2.2609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = -144.840283 kcal Electronic energy + Delta-G solvation = -15303.977781 eV Core-core repulsion = 12813.946786 eV Total energy + Delta-G solvation = -2490.030996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85708 -37.60165 -35.75679 -34.59299 -33.35676 -31.19786 -28.71729 -25.75012 -25.36620 -23.80676 -22.08928 -20.03340 -18.62244 -18.07675 -17.24483 -16.83302 -16.49089 -15.81955 -15.48231 -14.87441 -14.55239 -14.16597 -14.04870 -13.74113 -13.33388 -13.21406 -12.85550 -12.72192 -12.49750 -12.10204 -11.92372 -11.83820 -11.74818 -11.49107 -11.32579 -10.82115 -10.56832 -10.47944 -10.24921 -8.14472 -6.23800 1.37947 1.42180 1.49150 2.42635 2.98354 3.18443 3.41936 3.71101 3.96987 4.03295 4.19864 4.24082 4.35295 4.41798 4.54690 4.58530 4.73018 4.84298 4.95500 5.00354 5.11913 5.15725 5.21647 5.28267 5.42199 5.49492 5.56821 5.84196 5.92913 6.30040 6.51431 6.90891 7.03634 7.43093 8.97585 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.009787 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.162106 B = 2860.154184 C = 3317.579686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.088 3.912 4 H 0.079 0.921 5 C -0.176 4.176 6 C 0.110 3.890 7 H 0.078 0.922 8 O -0.581 6.581 9 C -0.116 4.116 10 H 0.063 0.937 11 C 0.055 3.945 12 C -0.533 4.533 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.267 1.267 20 C 0.085 3.915 21 O -0.393 6.393 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.388 0.612 30 H -0.007 1.007 31 H -0.020 1.020 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -0.785 -13.676 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.030 3.970 4 H 0.097 0.903 5 C -0.214 4.214 6 C 0.052 3.948 7 H 0.095 0.905 8 O -0.389 6.389 9 C -0.135 4.135 10 H 0.081 0.919 11 C 0.018 3.982 12 C -0.571 4.571 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.192 1.192 20 C 0.008 3.992 21 O -0.312 6.312 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.236 0.764 30 H 0.012 0.988 31 H -0.001 1.001 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.148 -0.704 -12.842 14.714 hybrid contribution 0.553 0.060 0.588 0.809 sum -6.595 -0.644 -12.254 13.931 Atomic orbital electron populations 1.21670 0.94402 1.02065 1.01940 1.21574 0.97416 0.93710 1.02597 1.22273 0.92485 0.95013 0.87195 0.90343 1.22922 0.97682 0.97821 1.02977 1.21891 0.80736 0.95166 0.97002 0.90476 1.86645 1.20642 1.84210 1.47373 1.21837 0.96885 0.99720 0.95079 0.91862 1.18679 0.93441 0.94402 0.91689 1.21693 1.31395 1.11365 0.92694 0.92136 1.25975 0.95220 0.95842 1.03084 1.70128 1.37210 1.23836 1.26467 0.85557 0.78851 0.78678 0.78299 1.19103 1.21025 1.19163 1.22447 0.92038 0.82665 1.02000 1.87948 1.77975 1.25537 1.39749 0.91363 0.91623 0.94017 0.88231 0.93696 0.93673 0.88035 0.76354 0.98829 1.00130 0.93134 0.91214 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.81 71.98 0.71 -2.58 16 2 C -0.12 -3.02 5.64 30.59 0.17 -2.85 16 3 C 0.09 2.63 2.64 30.63 0.08 2.71 16 4 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.18 -5.57 4.68 30.69 0.14 -5.43 16 6 C 0.11 3.78 3.24 30.72 0.10 3.87 16 7 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 8 O -0.58 -21.04 12.47 -148.98 -1.86 -22.90 16 9 C -0.12 -5.00 2.40 -10.70 -0.03 -5.02 16 10 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 11 C 0.05 3.09 3.87 29.85 0.12 3.20 16 12 C -0.53 -31.77 8.38 25.60 0.21 -31.56 16 13 H 0.06 3.40 7.07 -2.91 -0.02 3.38 16 14 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 15 N -0.94 -60.31 13.29 21.45 0.28 -60.02 16 16 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 C 0.09 3.23 6.10 72.01 0.44 3.67 16 21 O -0.39 -15.39 9.28 -148.98 -1.38 -16.77 16 22 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.14 7.82 -2.39 -0.02 1.12 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.84 6.73 -2.39 -0.02 1.82 16 28 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.39 9.23 9.08 -74.06 -0.67 8.55 16 30 H -0.01 -0.41 6.26 -2.39 -0.01 -0.42 16 31 H -0.02 -1.26 7.47 -2.39 -0.02 -1.28 16 32 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 3.49 6.89 -2.39 -0.02 3.47 16 Total: -1.00 -74.27 271.04 1.88 -72.40 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.40 Total: 12.64 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 2.41 Total: -33.78 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.28 Total: -60.02 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -3.24 Total: -39.67 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.27 1.88 -72.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.445 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds