Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46859 * 2 1 4 4 H 1.09001 * 109.48372 * 305.02204 * 3 2 1 5 5 C 1.53099 * 109.48003 * 184.99984 * 3 2 1 6 6 C 1.53175 * 109.16332 * 182.40565 * 5 3 2 7 7 H 1.09001 * 109.61666 * 176.88953 * 6 5 3 8 8 O 1.42903 * 109.54624 * 297.11267 * 6 5 3 9 9 C 1.53182 * 109.03713 * 56.97963 * 6 5 3 10 10 H 1.09006 * 109.51703 * 62.98798 * 9 6 5 11 11 C 1.53000 * 109.52070 * 183.11046 * 9 6 5 12 12 C 1.50703 * 109.46912 * 184.87567 * 11 9 6 13 13 H 1.07996 * 119.99751 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46999 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46942 * 119.99666 * 16 14 12 19 19 H 1.48504 * 109.46979 * 239.99580 * 16 14 12 20 20 C 1.53084 * 109.21444 * 303.05230 * 9 6 5 21 21 O 1.42897 * 109.48672 * 65.05720 * 3 2 1 22 22 H 1.09003 * 109.47219 * 300.00187 * 1 2 3 23 23 H 1.08990 * 109.46911 * 60.00394 * 1 2 3 24 24 H 1.09003 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46879 * 239.99254 * 2 1 3 26 26 H 1.09000 * 109.46802 * 119.99650 * 2 1 3 27 27 H 1.08995 * 109.51925 * 62.50039 * 5 3 2 28 28 H 1.09000 * 109.57360 * 302.34394 * 5 3 2 29 29 H 0.96694 * 113.99662 * 299.55859 * 8 6 5 30 30 H 1.09002 * 109.47398 * 304.87645 * 11 9 6 31 31 H 1.09001 * 109.47194 * 64.87825 * 11 9 6 32 32 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.48236 * 177.56486 * 20 9 6 34 34 H 1.09008 * 109.47960 * 297.58863 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0646 7 1 5.1628 2.8952 -0.0980 8 8 3.5565 3.6244 -1.1752 9 6 3.5968 3.5307 1.2419 10 1 4.0322 2.9998 2.0886 11 6 4.0319 4.9970 1.2793 12 6 3.6682 5.5950 2.6140 13 1 3.1763 4.9896 3.3609 14 6 3.9633 6.9150 2.8814 15 7 4.5627 7.6521 1.9720 16 14 3.5131 7.6560 4.5360 17 1 2.8524 6.6255 5.3766 18 1 4.7438 8.1349 5.2152 19 1 2.5848 8.7969 4.3313 20 6 2.0700 3.4479 1.3165 21 8 1.6632 2.0812 1.2215 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8534 0.9974 -1.0773 28 1 4.0004 0.8707 0.6926 29 1 3.8192 3.2725 -2.0366 30 1 5.1105 5.0598 1.1348 31 1 3.5263 5.5464 0.4851 32 1 4.7701 8.5809 2.1599 33 1 1.7292 3.8647 2.2642 34 1 1.6346 4.0139 0.4929 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -147.564211 kcal Electronic energy + Delta-G solvation = -15098.081398 eV Core-core repulsion = 12607.932284 eV Total energy + Delta-G solvation = -2490.149114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83945 -37.43650 -35.93103 -34.62752 -33.39754 -31.41779 -28.50166 -25.94713 -25.59412 -23.03870 -22.05318 -20.85318 -18.52776 -18.00155 -17.32856 -16.85967 -16.32029 -15.65514 -15.47846 -14.74902 -14.62405 -14.45247 -13.99229 -13.82192 -13.42259 -13.19343 -12.85750 -12.56867 -12.49968 -12.34403 -11.98132 -11.85689 -11.73979 -11.49468 -11.36633 -10.96288 -10.74935 -10.55438 -10.09024 -8.19224 -6.30172 1.39170 1.39682 1.53065 2.40742 2.91907 3.14492 3.43048 3.77121 3.94157 3.97149 4.12912 4.28322 4.36216 4.46726 4.53719 4.64353 4.77527 4.88533 4.93399 5.05074 5.10661 5.12599 5.17239 5.24159 5.36467 5.48284 5.49226 5.70826 5.86815 6.23685 6.41143 6.85152 7.01078 7.38820 8.92856 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044279 B = 0.007717 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.206482 B = 3627.671788 C = 4046.040831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.085 3.915 4 H 0.053 0.947 5 C -0.170 4.170 6 C 0.106 3.894 7 H 0.055 0.945 8 O -0.575 6.575 9 C -0.104 4.104 10 H 0.071 0.929 11 C 0.046 3.954 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.279 1.279 20 C 0.093 3.907 21 O -0.396 6.396 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.387 0.613 30 H -0.013 1.013 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 -14.928 -5.566 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.027 3.973 4 H 0.071 0.929 5 C -0.208 4.208 6 C 0.047 3.953 7 H 0.073 0.927 8 O -0.383 6.383 9 C -0.122 4.122 10 H 0.090 0.910 11 C 0.008 3.992 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.204 1.204 20 C 0.016 3.984 21 O -0.316 6.316 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.236 0.764 30 H 0.005 0.995 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.311 -14.514 -4.975 15.937 hybrid contribution 0.508 0.858 0.136 1.007 sum -3.803 -13.655 -4.839 14.978 Atomic orbital electron populations 1.21707 0.95314 1.02089 1.01507 1.21575 0.96745 0.92906 1.03514 1.22260 0.93639 0.94702 0.86650 0.92924 1.22863 0.96989 0.96299 1.04604 1.21881 0.96455 0.90494 0.86462 0.92744 1.86619 1.76962 1.57641 1.17064 1.21724 0.96897 0.97847 0.95767 0.91031 1.18776 0.94177 0.90823 0.95389 1.21722 1.38478 0.96403 1.00994 0.92045 1.25970 0.95044 0.97887 1.00885 1.70121 1.42951 1.08214 1.36118 0.85436 0.78081 0.78431 0.79351 1.18534 1.20303 1.20448 1.22240 0.93534 0.81619 1.00991 1.87827 1.78965 1.25066 1.39725 0.93937 0.92819 0.91060 0.88296 0.91404 0.87802 0.90094 0.76423 0.99473 0.98784 0.92846 0.89954 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.81 71.98 0.71 -2.37 16 2 C -0.11 -2.31 5.64 30.59 0.17 -2.13 16 3 C 0.08 2.38 2.50 30.62 0.08 2.46 16 4 H 0.05 1.54 7.82 -2.39 -0.02 1.53 16 5 C -0.17 -4.37 5.12 30.69 0.16 -4.21 16 6 C 0.11 3.63 3.28 30.71 0.10 3.73 16 7 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 8 O -0.58 -19.93 11.60 -148.98 -1.73 -21.66 16 9 C -0.10 -4.49 2.17 -10.70 -0.02 -4.51 16 10 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 11 C 0.05 2.50 4.20 29.85 0.13 2.62 16 12 C -0.54 -31.24 8.44 25.60 0.22 -31.02 16 13 H 0.06 3.43 7.07 -2.91 -0.02 3.41 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 15 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 16 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 C 0.09 3.89 5.75 72.01 0.41 4.30 16 21 O -0.40 -14.39 9.94 -148.98 -1.48 -15.87 16 22 H 0.04 1.05 7.83 -2.39 -0.02 1.03 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.39 8.82 9.09 -74.06 -0.67 8.15 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H -0.01 -0.38 7.78 -2.39 -0.02 -0.40 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 33 H 0.08 3.67 7.04 -2.39 -0.02 3.65 16 34 H 0.03 1.56 7.82 -2.38 -0.02 1.54 16 Total: -1.00 -69.31 274.08 1.90 -67.41 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.39 Total: 11.52 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 2.41 Total: -30.69 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.28 Total: -57.99 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -3.21 Total: -37.53 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.31 1.90 -67.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.151 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds