Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 H 1.08999 * 109.47763 * 304.97486 * 3 2 1 5 5 C 1.53092 * 109.48901 * 184.94432 * 3 2 1 6 6 C 1.53171 * 109.16254 * 182.39922 * 5 3 2 7 7 H 1.09004 * 109.54570 * 176.84643 * 6 5 3 8 8 O 1.42900 * 109.54908 * 297.11312 * 6 5 3 9 9 C 1.53178 * 109.03719 * 56.98437 * 6 5 3 10 10 H 1.08994 * 109.57780 * 183.08070 * 9 6 5 11 11 C 1.53005 * 109.52416 * 62.92076 * 9 6 5 12 12 C 1.50695 * 109.47088 * 175.31651 * 11 9 6 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.53093 * 109.16317 * 303.01974 * 9 6 5 21 21 O 1.42898 * 109.41466 * 57.60281 * 20 9 6 22 22 H 1.08998 * 109.46954 * 300.00452 * 1 2 3 23 23 H 1.09002 * 109.46774 * 60.00175 * 1 2 3 24 24 H 1.08993 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 239.99548 * 2 1 3 26 26 H 1.09002 * 109.46774 * 119.99825 * 2 1 3 27 27 H 1.08999 * 109.52298 * 302.31307 * 5 3 2 28 28 H 1.09005 * 109.51938 * 62.43606 * 5 3 2 29 29 H 0.96697 * 114.00323 * 299.56126 * 8 6 5 30 30 H 1.09002 * 109.46935 * 55.31617 * 11 9 6 31 31 H 1.08998 * 109.47061 * 295.32410 * 11 9 6 32 32 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 33 33 H 1.08991 * 109.48459 * 177.59114 * 20 9 6 34 34 H 1.09003 * 109.47750 * 297.62788 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5659 1.4447 -0.1244 6 6 4.0732 2.8887 -0.0633 7 1 5.1628 2.8941 -0.0950 8 8 3.5574 3.6241 -1.1747 9 6 3.5956 3.5313 1.2425 10 1 3.9053 4.5759 1.2702 11 6 4.2044 2.7858 2.4319 12 6 3.8272 3.4875 3.7110 13 1 3.2142 4.3761 3.6790 14 6 4.2647 2.9951 4.9223 15 7 5.0116 1.9134 4.9613 16 14 3.7967 3.8645 6.5080 17 1 2.3179 3.8864 6.6426 18 1 4.3118 5.2571 6.4797 19 1 4.3876 3.1410 7.6623 20 6 2.0686 3.4484 1.3142 21 8 1.6621 2.0817 1.2209 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9991 0.8714 0.6952 28 1 3.8545 0.9962 -1.0750 29 1 3.8209 3.2720 -2.0358 30 1 5.2898 2.7689 2.3331 31 1 3.8256 1.7639 2.4527 32 1 5.2544 1.4616 4.1379 33 1 1.7259 3.8658 2.2610 34 1 1.6348 4.0137 0.4893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260770077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -126.557108 kcal Electronic energy + Delta-G solvation = -15371.874665 eV Core-core repulsion = 12882.636487 eV Total energy + Delta-G solvation = -2489.238178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.54516 -36.07001 -34.38466 -33.17661 -31.67352 -29.75192 -26.30946 -24.67876 -23.51185 -22.19277 -20.98656 -18.65909 -16.86333 -16.58472 -15.83750 -15.49908 -14.51360 -14.30367 -13.72348 -13.67720 -13.46306 -12.82106 -12.70954 -12.15107 -11.67001 -11.49438 -11.35896 -10.91773 -10.85138 -10.82840 -10.58346 -10.15477 -10.08406 -9.96575 -9.83275 -9.37312 -8.68272 -8.43292 -8.25878 -6.30424 -3.97961 3.47332 3.49924 3.67810 4.35237 4.51334 4.64657 4.96433 5.17794 5.31434 5.38750 5.46861 5.51115 5.63294 5.69823 5.79998 5.95882 6.01027 6.07632 6.20732 6.26074 6.32553 6.41361 6.50636 6.54941 6.81670 6.93914 7.35416 7.59931 7.86388 7.93968 8.26175 8.50843 8.93846 9.72707 11.10251 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.009381 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.959046 B = 2984.033043 C = 3349.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.097 3.903 4 H 0.053 0.947 5 C -0.181 4.181 6 C 0.102 3.898 7 H 0.052 0.948 8 O -0.568 6.568 9 C -0.101 4.101 10 H 0.071 0.929 11 C 0.022 3.978 12 C -0.593 4.593 13 H 0.048 0.952 14 C 0.015 3.985 15 N -0.914 5.914 16 Si 1.067 2.933 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.084 3.916 21 O -0.368 6.368 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.366 0.634 30 H 0.003 0.997 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -1.494 -11.613 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.039 3.961 4 H 0.071 0.929 5 C -0.218 4.218 6 C 0.044 3.956 7 H 0.070 0.930 8 O -0.373 6.373 9 C -0.120 4.120 10 H 0.090 0.910 11 C -0.015 4.015 12 C -0.632 4.632 13 H 0.067 0.933 14 C -0.188 4.188 15 N -0.550 5.550 16 Si 0.896 3.104 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.007 3.993 21 O -0.287 6.287 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.212 0.788 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.070 -1.289 -9.322 10.690 hybrid contribution 0.409 -0.123 -2.387 2.425 sum -4.661 -1.412 -11.709 12.682 Atomic orbital electron populations 1.21692 0.95543 1.00973 1.02217 1.21543 0.96505 0.95155 1.02234 1.21889 0.92703 0.93415 0.88112 0.92948 1.22893 0.98136 0.98338 1.02479 1.22062 0.96366 0.90078 0.87095 0.92976 1.86546 1.77293 1.57248 1.16212 1.21729 0.96856 1.00730 0.92693 0.91018 1.19188 0.94480 0.96122 0.91748 1.21952 1.35629 1.13415 0.92178 0.93342 1.25785 0.94493 0.96411 1.02143 1.70780 1.34767 1.17990 1.31506 0.83573 0.76093 0.75227 0.75555 1.21416 1.21551 1.20846 1.22460 0.93792 0.81883 1.01149 1.87938 1.78008 1.25490 1.37258 0.91699 0.93325 0.93200 0.91441 0.91058 0.89581 0.91960 0.78790 0.97915 0.96035 0.92238 0.88287 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.81 37.16 0.36 -1.57 16 2 C -0.12 -1.68 5.64 -26.73 -0.15 -1.83 16 3 C 0.10 1.62 2.49 -26.68 -0.07 1.56 16 4 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 5 C -0.18 -2.96 4.76 -26.60 -0.13 -3.08 16 6 C 0.10 1.82 3.31 -26.55 -0.09 1.73 16 7 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 8 O -0.57 -8.99 12.28 -35.23 -0.43 -9.43 16 9 C -0.10 -2.19 2.36 -90.48 -0.21 -2.40 16 10 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 11 C 0.02 0.55 3.28 -27.88 -0.09 0.46 16 12 C -0.59 -16.98 8.38 -34.44 -0.29 -17.27 16 13 H 0.05 1.36 7.07 -52.49 -0.37 0.99 16 14 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 15 N -0.91 -28.36 13.65 55.43 0.76 -27.60 16 16 Si 1.07 25.77 29.90 -169.99 -5.08 20.68 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.08 1.74 5.95 37.21 0.22 1.96 16 21 O -0.37 -7.62 9.28 -35.23 -0.33 -7.94 16 22 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.59 6.73 -51.93 -0.35 1.24 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.37 3.98 9.09 45.56 0.41 4.39 16 30 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 31 H 0.02 0.59 6.13 -51.93 -0.32 0.27 16 32 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 33 H 0.10 2.19 6.89 -51.93 -0.36 1.83 16 34 H 0.04 0.69 7.82 -51.93 -0.41 0.28 16 LS Contribution 269.47 15.07 4.06 4.06 Total: -1.00 -31.96 269.47 -6.23 -38.19 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.67 Total: 2.12 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.54 Total: -20.08 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.76 Total: -27.60 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.76 Total: -17.37 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.96 -6.23 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.371 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds