Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 H 1.08999 * 109.47763 * 304.97486 * 3 2 1 5 5 C 1.53092 * 109.48901 * 184.94432 * 3 2 1 6 6 C 1.53171 * 109.16254 * 182.39922 * 5 3 2 7 7 H 1.09004 * 109.54570 * 176.84643 * 6 5 3 8 8 O 1.42900 * 109.54908 * 297.11312 * 6 5 3 9 9 C 1.53178 * 109.03719 * 56.98437 * 6 5 3 10 10 H 1.08994 * 109.57780 * 183.08070 * 9 6 5 11 11 C 1.53005 * 109.52416 * 62.92076 * 9 6 5 12 12 C 1.50695 * 109.47088 * 175.31651 * 11 9 6 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.53093 * 109.16317 * 303.01974 * 9 6 5 21 21 O 1.42898 * 109.41466 * 57.60281 * 20 9 6 22 22 H 1.08998 * 109.46954 * 300.00452 * 1 2 3 23 23 H 1.09002 * 109.46774 * 60.00175 * 1 2 3 24 24 H 1.08993 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 239.99548 * 2 1 3 26 26 H 1.09002 * 109.46774 * 119.99825 * 2 1 3 27 27 H 1.08999 * 109.52298 * 302.31307 * 5 3 2 28 28 H 1.09005 * 109.51938 * 62.43606 * 5 3 2 29 29 H 0.96697 * 114.00323 * 299.56126 * 8 6 5 30 30 H 1.09002 * 109.46935 * 55.31617 * 11 9 6 31 31 H 1.08998 * 109.47061 * 295.32410 * 11 9 6 32 32 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 33 33 H 1.08991 * 109.48459 * 177.59114 * 20 9 6 34 34 H 1.09003 * 109.47750 * 297.62788 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5659 1.4447 -0.1244 6 6 4.0732 2.8887 -0.0633 7 1 5.1628 2.8941 -0.0950 8 8 3.5574 3.6241 -1.1747 9 6 3.5956 3.5313 1.2425 10 1 3.9053 4.5759 1.2702 11 6 4.2044 2.7858 2.4319 12 6 3.8272 3.4875 3.7110 13 1 3.2142 4.3761 3.6790 14 6 4.2647 2.9951 4.9223 15 7 5.0116 1.9134 4.9613 16 14 3.7967 3.8645 6.5080 17 1 2.3179 3.8864 6.6426 18 1 4.3118 5.2571 6.4797 19 1 4.3876 3.1410 7.6623 20 6 2.0686 3.4484 1.3142 21 8 1.6621 2.0817 1.2209 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9991 0.8714 0.6952 28 1 3.8545 0.9962 -1.0750 29 1 3.8209 3.2720 -2.0358 30 1 5.2898 2.7689 2.3331 31 1 3.8256 1.7639 2.4527 32 1 5.2544 1.4616 4.1379 33 1 1.7259 3.8658 2.2610 34 1 1.6348 4.0137 0.4893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -149.519645 kcal Electronic energy + Delta-G solvation = -15372.870395 eV Core-core repulsion = 12882.636487 eV Total energy + Delta-G solvation = -2490.233908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03649 -37.42467 -36.19797 -34.72199 -33.46128 -31.12540 -28.25397 -26.14249 -25.30197 -23.92403 -22.23343 -20.29861 -18.84865 -18.02591 -17.29822 -17.05369 -16.14370 -15.76438 -15.62308 -15.06162 -14.72563 -14.63743 -14.13680 -13.68282 -13.46931 -13.16289 -12.76032 -12.58459 -12.41922 -12.06552 -11.99958 -11.93736 -11.79606 -11.63728 -11.39579 -10.90636 -10.60554 -10.50751 -10.12870 -8.65973 -6.34048 1.51391 1.60362 1.78917 2.56926 2.93239 3.18841 3.26173 3.68437 3.86819 3.89280 4.08316 4.20015 4.25945 4.37589 4.47881 4.55349 4.65636 4.73238 4.81124 4.94843 4.98297 5.05649 5.10131 5.16139 5.25308 5.33053 5.43742 5.53011 6.01278 6.20743 6.44765 6.60315 6.86344 7.45642 8.75032 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.009381 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.959046 B = 2984.033043 C = 3349.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.089 3.911 4 H 0.069 0.931 5 C -0.176 4.176 6 C 0.112 3.888 7 H 0.053 0.947 8 O -0.571 6.571 9 C -0.102 4.102 10 H 0.061 0.939 11 C 0.032 3.968 12 C -0.607 4.607 13 H 0.050 0.950 14 C -0.040 4.040 15 N -0.939 5.939 16 Si 1.114 2.886 17 H -0.271 1.271 18 H -0.268 1.268 19 H -0.284 1.284 20 C 0.090 3.910 21 O -0.394 6.394 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.393 0.607 30 H -0.018 1.018 31 H 0.001 0.999 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -1.282 -13.150 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.087 0.913 5 C -0.214 4.214 6 C 0.053 3.947 7 H 0.071 0.929 8 O -0.380 6.380 9 C -0.121 4.121 10 H 0.079 0.921 11 C -0.005 4.005 12 C -0.645 4.645 13 H 0.068 0.932 14 C -0.237 4.237 15 N -0.577 5.577 16 Si 0.936 3.064 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.209 1.209 20 C 0.014 3.986 21 O -0.313 6.313 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.243 0.757 30 H 0.000 1.000 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.868 -1.077 -10.910 12.435 hybrid contribution 0.654 -0.207 -2.009 2.122 sum -5.215 -1.284 -12.919 13.990 Atomic orbital electron populations 1.21670 0.94642 1.02114 1.01723 1.21596 0.97331 0.93573 1.02762 1.22216 0.93036 0.94594 0.86956 0.91345 1.22863 0.97755 0.97130 1.03607 1.21707 0.96294 0.90524 0.86137 0.92863 1.86474 1.77209 1.57189 1.17087 1.21574 0.97410 0.99673 0.93455 0.92083 1.18985 0.93150 0.95319 0.93068 1.22385 1.35076 1.13465 0.93542 0.93194 1.27345 0.93840 0.96363 1.06114 1.70913 1.36641 1.19351 1.30763 0.82976 0.76816 0.75090 0.71549 1.19653 1.19327 1.20898 1.22276 0.93021 0.82601 1.00740 1.87910 1.78319 1.25334 1.39783 0.94213 0.91749 0.91305 0.88092 0.93283 0.92464 0.87661 0.75741 1.00011 0.98094 0.93704 0.90620 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.81 71.98 0.71 -2.78 16 2 C -0.12 -3.07 5.64 30.60 0.17 -2.90 16 3 C 0.09 2.82 2.49 30.62 0.08 2.90 16 4 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 5 C -0.18 -5.44 4.76 30.68 0.15 -5.29 16 6 C 0.11 3.83 3.31 30.71 0.10 3.93 16 7 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 8 O -0.57 -16.27 12.28 -148.98 -1.83 -18.10 16 9 C -0.10 -4.43 2.36 -10.70 -0.03 -4.46 16 10 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 11 C 0.03 1.69 3.28 29.85 0.10 1.79 16 12 C -0.61 -35.49 8.38 25.60 0.21 -35.28 16 13 H 0.05 2.84 7.07 -2.91 -0.02 2.82 16 14 C -0.04 -2.36 5.46 84.66 0.46 -1.90 16 15 N -0.94 -59.75 13.65 21.45 0.29 -59.46 16 16 Si 1.11 51.87 29.90 68.60 2.05 53.92 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 C 0.09 3.75 5.95 72.01 0.43 4.18 16 21 O -0.39 -16.27 9.28 -148.98 -1.38 -17.65 16 22 H 0.04 1.14 7.82 -2.39 -0.02 1.13 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.06 2.12 6.73 -2.39 -0.02 2.10 16 28 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.39 6.83 9.09 -74.06 -0.67 6.15 16 30 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 31 H 0.00 0.05 6.13 -2.39 -0.01 0.03 16 32 H 0.25 16.34 7.22 -92.70 -0.67 15.67 16 33 H 0.08 3.43 6.89 -2.39 -0.02 3.41 16 34 H 0.06 2.06 7.82 -2.39 -0.02 2.04 16 Total: -1.00 -70.20 269.47 2.01 -68.19 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.50 Total: 12.90 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 2.38 Total: -39.81 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.29 Total: -59.46 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -3.21 Total: -35.74 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -70.20 2.01 -68.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.329 kcal (2) G-P(sol) polarization free energy of solvation -70.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds