Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.49086 * 2 1 4 4 O 1.42900 * 109.48562 * 239.96468 * 2 1 3 5 5 C 1.42896 * 114.09793 * 178.86158 * 4 2 1 6 6 C 1.53089 * 109.41625 * 61.16321 * 5 4 2 7 7 C 1.53183 * 109.16135 * 302.38470 * 6 5 4 8 8 H 1.08993 * 109.54521 * 297.12059 * 7 6 5 9 9 O 1.42902 * 109.54568 * 176.84598 * 7 6 5 10 10 C 1.53095 * 109.47476 * 120.02208 * 2 1 3 11 11 H 1.09002 * 109.52170 * 57.68821 * 10 2 1 12 12 C 1.52999 * 109.52396 * 297.56068 * 10 2 1 13 13 C 1.50697 * 109.47059 * 175.12838 * 12 10 2 14 14 H 1.08000 * 120.00419 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99997 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99919 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00062 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47235 * 90.00557 * 17 15 13 19 19 H 1.48501 * 109.47325 * 210.00467 * 17 15 13 20 20 H 1.48504 * 109.47274 * 330.00663 * 17 15 13 21 21 H 1.09000 * 109.47128 * 299.98044 * 1 2 3 22 22 H 1.09007 * 109.46415 * 59.97987 * 1 2 3 23 23 H 1.09000 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.46918 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46510 * 300.02130 * 3 2 1 26 26 H 1.08999 * 109.47296 * 60.02179 * 3 2 1 27 27 H 1.09010 * 109.47819 * 181.14042 * 5 4 2 28 28 H 1.09000 * 109.48289 * 301.16227 * 5 4 2 29 29 H 1.08993 * 109.52588 * 62.29017 * 6 5 4 30 30 H 1.08999 * 109.52597 * 182.42616 * 6 5 4 31 31 H 0.96701 * 113.99643 * 60.44687 * 9 7 6 32 32 H 1.09000 * 109.47011 * 295.12811 * 12 10 2 33 33 H 1.08999 * 109.46934 * 55.12821 * 12 10 2 34 34 H 0.96998 * 119.99641 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 8 2.0067 -0.6743 -1.1663 5 6 3.4308 -0.7094 -1.2788 6 6 4.0176 -1.4601 -0.0806 7 6 3.5711 -0.7708 1.2124 8 1 3.9689 0.2436 1.2410 9 8 4.0535 -1.5072 2.3381 10 6 2.0405 -0.7222 1.2497 11 1 1.6442 -1.7374 1.2711 12 6 1.5819 0.0322 2.4993 13 6 1.9817 -0.7423 3.7286 14 1 2.5097 -1.6792 3.6287 15 6 1.6726 -0.2555 4.9810 16 7 2.0210 -0.9317 6.0538 17 14 0.7588 1.3645 5.1540 18 1 -0.7041 1.1090 5.1648 19 1 1.1556 2.0235 6.4242 20 1 1.0983 2.2489 4.0104 21 1 -0.3633 0.5135 0.8902 22 1 -0.3632 0.5142 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1305 1.4420 -0.0005 25 1 1.6770 1.9564 -0.8899 26 1 1.6777 1.9562 0.8902 27 1 3.7101 -1.2206 -2.2002 28 1 3.8194 0.3088 -1.2958 29 1 3.6613 -2.4902 -0.0860 30 1 5.1058 -1.4508 -0.1422 31 1 5.0171 -1.5781 2.3780 32 1 2.0499 1.0164 2.5218 33 1 0.4980 0.1457 2.4779 34 1 1.8039 -0.5890 6.9349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260854308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -103.603230 kcal Electronic energy + Delta-G solvation = -15738.194317 eV Core-core repulsion = 13249.951494 eV Total energy + Delta-G solvation = -2488.242823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94355 -36.08032 -34.33451 -32.28700 -31.46743 -29.27592 -27.12148 -26.39972 -23.55476 -21.43589 -20.94702 -18.40023 -17.26307 -16.27047 -15.53933 -15.25994 -14.61279 -14.08237 -14.06879 -13.51819 -12.91832 -12.87145 -12.27731 -12.14868 -11.88524 -11.64350 -11.46258 -11.18445 -11.16666 -10.74444 -10.71406 -10.35204 -9.80726 -9.73254 -9.60627 -9.16073 -8.85528 -8.67545 -8.34836 -5.84326 -3.77551 3.36464 3.44458 3.45466 4.04642 4.56411 4.81984 5.08145 5.14557 5.20021 5.38328 5.45045 5.46835 5.61320 5.72372 5.82095 5.90502 5.95762 6.07303 6.12937 6.21796 6.31257 6.39911 6.48434 6.57254 6.76928 6.82336 7.25040 7.44794 7.59987 7.94738 8.47446 8.80204 9.42224 9.78201 11.29324 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035049 B = 0.011744 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.699499 B = 2383.557004 C = 2887.259640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.114 3.886 3 C -0.180 4.180 4 O -0.380 6.380 5 C 0.064 3.936 6 C -0.192 4.192 7 C 0.118 3.882 8 H 0.046 0.954 9 O -0.519 6.519 10 C -0.087 4.087 11 H 0.077 0.923 12 C -0.007 4.007 13 C -0.491 4.491 14 H 0.098 0.902 15 C 0.060 3.940 16 N -0.909 5.909 17 Si 0.866 3.134 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.269 1.269 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.350 0.650 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 3.072 -13.470 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 C -0.237 4.237 4 O -0.299 6.299 5 C -0.013 4.013 6 C -0.230 4.230 7 C 0.058 3.942 8 H 0.063 0.937 9 O -0.321 6.321 10 C -0.106 4.106 11 H 0.095 0.905 12 C -0.044 4.044 13 C -0.529 4.529 14 H 0.116 0.884 15 C -0.139 4.139 16 N -0.550 5.550 17 Si 0.695 3.305 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.194 1.194 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.194 0.806 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.593 2.955 -13.286 13.703 hybrid contribution 0.428 1.055 0.303 1.178 sum 2.022 4.010 -12.982 13.737 Atomic orbital electron populations 1.21787 0.92472 1.02865 1.02131 1.21616 0.94907 0.91009 0.84971 1.22503 1.01591 0.97023 1.02570 1.87901 1.20310 1.77746 1.43987 1.22426 0.81971 0.99174 0.97696 1.23066 1.00582 1.01976 0.97414 1.21676 0.95249 0.93280 0.83982 0.93656 1.87143 1.23771 1.76152 1.45034 1.21664 0.93005 1.00992 0.94891 0.90511 1.19712 0.95668 0.95735 0.93265 1.21403 1.34651 1.08759 0.88082 0.88419 1.25016 0.96116 0.96532 0.96191 1.69915 1.48565 1.38846 0.97635 0.86998 0.80583 0.85612 0.77342 1.20571 1.21686 1.19389 0.90354 0.92611 0.91865 0.92305 0.92616 0.90640 0.89531 0.93277 0.90609 0.91562 0.80568 0.96697 0.96742 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.56 37.16 0.32 -1.84 16 2 C 0.11 1.95 0.88 -90.57 -0.08 1.87 16 3 C -0.18 -2.79 7.52 37.16 0.28 -2.51 16 4 O -0.38 -6.30 10.24 -35.23 -0.36 -6.66 16 5 C 0.06 0.89 6.51 37.20 0.24 1.13 16 6 C -0.19 -2.85 5.77 -26.59 -0.15 -3.00 16 7 C 0.12 2.18 2.65 -26.54 -0.07 2.11 16 8 H 0.05 0.83 6.62 -51.93 -0.34 0.48 16 9 O -0.52 -10.86 10.04 -35.23 -0.35 -11.21 16 10 C -0.09 -1.76 1.49 -90.48 -0.13 -1.90 16 11 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 12 C -0.01 -0.16 2.77 -27.88 -0.08 -0.24 16 13 C -0.49 -14.10 8.50 -34.44 -0.29 -14.39 16 14 H 0.10 3.07 5.97 -52.49 -0.31 2.75 16 15 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 16 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 17 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 H 0.08 1.27 6.39 -51.93 -0.33 0.94 16 22 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.87 4.97 -51.93 -0.26 0.61 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.25 6.50 -51.93 -0.34 0.91 16 27 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 28 H 0.05 0.63 6.34 -51.93 -0.33 0.30 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.35 5.61 9.09 45.56 0.41 6.02 16 32 H 0.01 0.36 5.73 -51.93 -0.30 0.06 16 33 H 0.01 0.34 5.69 -51.93 -0.30 0.05 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 255.20 15.07 3.85 3.85 Total: -1.00 -32.59 255.20 -5.05 -37.64 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.22 Total: 4.07 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.07 Total: -17.08 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 0.77 Total: -27.93 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.71 Total: -17.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.59 -5.05 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.960 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds