Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.49086 * 2 1 4 4 O 1.42900 * 109.48562 * 239.96468 * 2 1 3 5 5 C 1.42896 * 114.09793 * 178.86158 * 4 2 1 6 6 C 1.53089 * 109.41625 * 61.16321 * 5 4 2 7 7 C 1.53183 * 109.16135 * 302.38470 * 6 5 4 8 8 H 1.08993 * 109.54521 * 297.12059 * 7 6 5 9 9 O 1.42902 * 109.54568 * 176.84598 * 7 6 5 10 10 C 1.53095 * 109.47476 * 120.02208 * 2 1 3 11 11 H 1.09002 * 109.52170 * 57.68821 * 10 2 1 12 12 C 1.52999 * 109.52396 * 297.56068 * 10 2 1 13 13 C 1.50697 * 109.47059 * 175.12838 * 12 10 2 14 14 H 1.08000 * 120.00419 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99997 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99919 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00062 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47235 * 90.00557 * 17 15 13 19 19 H 1.48501 * 109.47325 * 210.00467 * 17 15 13 20 20 H 1.48504 * 109.47274 * 330.00663 * 17 15 13 21 21 H 1.09000 * 109.47128 * 299.98044 * 1 2 3 22 22 H 1.09007 * 109.46415 * 59.97987 * 1 2 3 23 23 H 1.09000 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.46918 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46510 * 300.02130 * 3 2 1 26 26 H 1.08999 * 109.47296 * 60.02179 * 3 2 1 27 27 H 1.09010 * 109.47819 * 181.14042 * 5 4 2 28 28 H 1.09000 * 109.48289 * 301.16227 * 5 4 2 29 29 H 1.08993 * 109.52588 * 62.29017 * 6 5 4 30 30 H 1.08999 * 109.52597 * 182.42616 * 6 5 4 31 31 H 0.96701 * 113.99643 * 60.44687 * 9 7 6 32 32 H 1.09000 * 109.47011 * 295.12811 * 12 10 2 33 33 H 1.08999 * 109.46934 * 55.12821 * 12 10 2 34 34 H 0.96998 * 119.99641 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 8 2.0067 -0.6743 -1.1663 5 6 3.4308 -0.7094 -1.2788 6 6 4.0176 -1.4601 -0.0806 7 6 3.5711 -0.7708 1.2124 8 1 3.9689 0.2436 1.2410 9 8 4.0535 -1.5072 2.3381 10 6 2.0405 -0.7222 1.2497 11 1 1.6442 -1.7374 1.2711 12 6 1.5819 0.0322 2.4993 13 6 1.9817 -0.7423 3.7286 14 1 2.5097 -1.6792 3.6287 15 6 1.6726 -0.2555 4.9810 16 7 2.0210 -0.9317 6.0538 17 14 0.7588 1.3645 5.1540 18 1 -0.7041 1.1090 5.1648 19 1 1.1556 2.0235 6.4242 20 1 1.0983 2.2489 4.0104 21 1 -0.3633 0.5135 0.8902 22 1 -0.3632 0.5142 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1305 1.4420 -0.0005 25 1 1.6770 1.9564 -0.8899 26 1 1.6777 1.9562 0.8902 27 1 3.7101 -1.2206 -2.2002 28 1 3.8194 0.3088 -1.2958 29 1 3.6613 -2.4902 -0.0860 30 1 5.1058 -1.4508 -0.1422 31 1 5.0171 -1.5781 2.3780 32 1 2.0499 1.0164 2.5218 33 1 0.4980 0.1457 2.4779 34 1 1.8039 -0.5890 6.9349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260854308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -128.295250 kcal Electronic energy + Delta-G solvation = -15739.265043 eV Core-core repulsion = 13249.951494 eV Total energy + Delta-G solvation = -2489.313549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.29380 -37.57080 -35.89663 -34.29015 -32.88597 -30.97110 -28.36664 -27.96951 -25.19043 -22.89631 -22.55594 -19.82070 -19.13574 -17.93942 -16.98138 -16.65763 -16.00907 -15.98896 -15.56893 -14.97636 -14.45353 -14.33034 -14.03636 -13.60703 -13.30113 -13.01642 -12.90813 -12.75582 -12.59311 -12.34505 -12.12878 -12.08791 -11.63925 -11.33348 -11.27085 -10.78192 -10.60802 -10.45706 -10.26190 -8.11591 -6.09836 1.36239 1.37522 1.47945 2.43757 2.84907 3.19900 3.43563 3.82282 3.87229 3.94217 4.12032 4.21909 4.34628 4.48866 4.52202 4.70345 4.79471 4.82146 4.86690 4.90225 5.00520 5.05998 5.10908 5.19647 5.24787 5.33089 5.47229 5.64530 5.80124 6.35340 6.57057 7.02254 7.21530 7.49372 9.05117 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035049 B = 0.011744 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.699499 B = 2383.557004 C = 2887.259640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.118 3.882 3 C -0.177 4.177 4 O -0.389 6.389 5 C 0.059 3.941 6 C -0.182 4.182 7 C 0.111 3.889 8 H 0.053 0.947 9 O -0.557 6.557 10 C -0.088 4.088 11 H 0.043 0.957 12 C -0.001 4.001 13 C -0.493 4.493 14 H 0.058 0.942 15 C -0.006 4.006 16 N -0.960 5.960 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.245 1.245 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.368 0.632 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 5.054 -15.770 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.079 3.921 3 C -0.234 4.234 4 O -0.309 6.309 5 C -0.018 4.018 6 C -0.220 4.220 7 C 0.052 3.948 8 H 0.070 0.930 9 O -0.362 6.362 10 C -0.107 4.107 11 H 0.062 0.938 12 C -0.038 4.038 13 C -0.531 4.531 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.603 5.603 17 Si 0.760 3.240 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.168 1.168 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.215 0.785 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.597 4.938 -15.621 16.461 hybrid contribution 0.507 0.318 1.000 1.165 sum 2.104 5.256 -14.621 15.679 Atomic orbital electron populations 1.21814 0.91927 1.02695 1.03071 1.21511 0.95478 0.91603 0.83541 1.22471 1.02087 0.95567 1.03265 1.87898 1.22112 1.77830 1.43054 1.22709 0.80462 1.00443 0.98142 1.22953 1.02529 1.00676 0.95793 1.21809 0.94020 0.93898 0.85094 0.92960 1.87080 1.25625 1.76715 1.46805 1.21616 0.94607 0.99077 0.95365 0.93808 1.19613 0.95837 0.95536 0.92785 1.21693 1.33337 1.07828 0.90227 0.92365 1.25936 0.97469 1.00801 0.95792 1.70093 1.50762 1.41232 0.98260 0.85885 0.79287 0.80914 0.77947 1.19650 1.21704 1.16815 0.90959 0.90059 0.92695 0.91586 0.90119 0.91704 0.86620 0.91448 0.92199 0.88499 0.78528 0.96085 0.96297 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.56 71.98 0.62 -3.51 16 2 C 0.12 3.78 0.88 -10.76 -0.01 3.77 16 3 C -0.18 -4.88 7.52 71.98 0.54 -4.34 16 4 O -0.39 -11.79 10.24 -148.98 -1.52 -13.32 16 5 C 0.06 1.40 6.51 72.01 0.47 1.87 16 6 C -0.18 -4.98 5.77 30.69 0.18 -4.80 16 7 C 0.11 4.00 2.65 30.72 0.08 4.08 16 8 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 9 O -0.56 -23.88 10.04 -148.98 -1.50 -25.37 16 10 C -0.09 -3.54 1.49 -10.70 -0.02 -3.56 16 11 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 12 C 0.00 -0.03 2.77 29.85 0.08 0.06 16 13 C -0.49 -29.01 8.50 25.60 0.22 -28.79 16 14 H 0.06 3.84 5.97 -2.91 -0.02 3.83 16 15 C -0.01 -0.36 5.47 84.65 0.46 0.10 16 16 N -0.96 -62.57 13.96 21.45 0.30 -62.27 16 17 Si 0.93 45.32 27.47 68.60 1.88 47.21 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 21 H 0.07 2.22 6.39 -2.39 -0.02 2.21 16 22 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.71 4.97 -2.39 -0.01 1.69 16 25 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.06 1.93 6.50 -2.39 -0.02 1.92 16 27 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.07 1.41 6.34 -2.39 -0.02 1.39 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.37 11.98 9.09 -74.06 -0.67 11.30 16 32 H 0.02 0.97 5.73 -2.39 -0.01 0.96 16 33 H 0.02 0.87 5.69 -2.39 -0.01 0.86 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -72.03 255.20 2.15 -69.87 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.37 Total: 19.00 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 2.62 Total: -35.12 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.30 Total: -62.27 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -3.02 Total: -38.69 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -72.03 2.15 -69.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.422 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds