Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47638 * 2 1 4 4 O 1.42898 * 109.48518 * 239.96348 * 2 1 3 5 5 C 1.42905 * 114.09659 * 301.17372 * 4 2 1 6 6 C 1.53088 * 109.41266 * 298.84290 * 5 4 2 7 7 C 1.53185 * 109.21813 * 57.57358 * 6 5 4 8 8 H 1.08996 * 109.60113 * 183.21523 * 7 6 5 9 9 O 1.42904 * 109.49370 * 62.94803 * 7 6 5 10 10 C 1.53089 * 109.47887 * 120.01516 * 2 1 3 11 11 H 1.09005 * 109.52283 * 182.34541 * 10 2 1 12 12 C 1.53001 * 109.52515 * 302.46968 * 10 2 1 13 13 C 1.50703 * 109.47002 * 184.87406 * 12 10 2 14 14 H 1.08000 * 120.00111 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99672 * 180.02562 * 13 12 10 16 16 N 1.31506 * 119.99999 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99705 * 180.27260 * 15 13 12 18 18 H 1.48498 * 109.47475 * 269.72767 * 17 15 13 19 19 H 1.48504 * 109.46978 * 29.72682 * 17 15 13 20 20 H 1.48501 * 109.47058 * 149.72596 * 17 15 13 21 21 H 1.08999 * 109.47582 * 291.32450 * 1 2 3 22 22 H 1.09000 * 109.47421 * 51.32848 * 1 2 3 23 23 H 1.09002 * 109.47038 * 171.32608 * 1 2 3 24 24 H 1.09007 * 109.46977 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46860 * 300.01962 * 3 2 1 26 26 H 1.08994 * 109.47844 * 60.01825 * 3 2 1 27 27 H 1.09002 * 109.47641 * 58.81948 * 5 4 2 28 28 H 1.08997 * 109.48332 * 178.85785 * 5 4 2 29 29 H 1.09005 * 109.52546 * 177.51610 * 6 5 4 30 30 H 1.08998 * 109.52279 * 297.70089 * 6 5 4 31 31 H 0.96698 * 113.99734 * 60.48155 * 9 7 6 32 32 H 1.08997 * 109.46893 * 64.88050 * 12 10 2 33 33 H 1.08994 * 109.47285 * 304.87489 * 12 10 2 34 34 H 0.97005 * 120.00262 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0066 -0.6743 -1.1662 5 6 1.5647 -2.0286 -1.2787 6 6 2.0766 -2.8321 -0.0804 7 6 1.5771 -2.1815 1.2134 8 1 1.9847 -2.7150 2.0720 9 8 0.1494 -2.2308 1.2516 10 6 2.0405 -0.7220 1.2497 11 1 3.1297 -0.6861 1.2717 12 6 1.4811 -0.0388 2.4993 13 6 2.0779 -0.6740 3.7287 14 1 2.7857 -1.4836 3.6288 15 6 1.7203 -0.2214 4.9811 16 7 0.8581 0.7641 5.1027 17 14 2.4659 -1.0036 6.5048 18 1 1.6123 -2.1347 6.9487 19 1 3.8272 -1.5053 6.1880 20 1 2.5509 0.0076 7.5891 21 1 -0.3634 0.3737 0.9573 22 1 -0.3634 0.6421 -0.8023 23 1 -0.3633 -1.0159 -0.1550 24 1 3.1302 1.4424 -0.0005 25 1 1.6765 1.9564 -0.8898 26 1 1.6772 1.9564 0.8901 27 1 0.4751 -2.0552 -1.2954 28 1 1.9532 -2.4625 -2.2000 29 1 1.7039 -3.8546 -0.1414 30 1 3.1665 -2.8398 -0.0858 31 1 -0.2138 -3.1267 1.2315 32 1 0.3974 -0.1527 2.5212 33 1 1.7348 1.0210 2.4783 34 1 0.6068 1.0828 5.9837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260854315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -130.069282 kcal Electronic energy + Delta-G solvation = -15779.679368 eV Core-core repulsion = 13290.288891 eV Total energy + Delta-G solvation = -2489.390477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31158 -37.28600 -35.91912 -34.31429 -32.84926 -30.53026 -28.34179 -27.74173 -25.60875 -23.01804 -22.49432 -19.76195 -18.79396 -17.61889 -17.04373 -16.87534 -16.41517 -15.74342 -15.27764 -14.71873 -14.36294 -14.26936 -14.00795 -13.46176 -13.20815 -13.18093 -12.87740 -12.65269 -12.49804 -12.42535 -12.12548 -11.99025 -11.74457 -11.26267 -11.19095 -10.82774 -10.54149 -10.44854 -9.96719 -8.14602 -6.22826 1.38604 1.39547 1.50008 2.41944 2.94159 3.18519 3.54119 3.91582 3.97802 4.01371 4.13303 4.28642 4.42755 4.58020 4.78756 4.79509 4.85565 4.88462 4.94147 5.02597 5.10977 5.20226 5.26784 5.30374 5.36852 5.57243 5.62938 5.83793 5.97368 6.30118 6.47997 6.91984 7.10383 7.43710 8.96977 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039419 B = 0.010139 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.151746 B = 2761.037414 C = 3046.829796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 C -0.136 4.136 4 O -0.394 6.394 5 C 0.057 3.943 6 C -0.179 4.179 7 C 0.117 3.883 8 H 0.044 0.956 9 O -0.560 6.560 10 C -0.093 4.093 11 H 0.058 0.942 12 C 0.043 3.957 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.265 1.265 20 H -0.284 1.284 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.378 0.622 32 H 0.008 0.992 33 H -0.008 1.008 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -6.918 -11.024 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.082 3.918 3 C -0.193 4.193 4 O -0.314 6.314 5 C -0.019 4.019 6 C -0.217 4.217 7 C 0.058 3.942 8 H 0.062 0.938 9 O -0.367 6.367 10 C -0.111 4.111 11 H 0.076 0.924 12 C 0.006 3.994 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.189 1.189 20 H -0.210 1.210 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.027 0.973 33 H 0.010 0.990 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.808 -6.071 -11.017 12.605 hybrid contribution 0.100 -0.757 1.428 1.619 sum 0.908 -6.828 -9.589 11.807 Atomic orbital electron populations 1.22485 0.95072 1.04002 1.00813 1.21380 0.93879 0.92343 0.84240 1.21781 1.01384 0.94005 1.02127 1.87850 1.74296 1.25772 1.43473 1.22672 0.99556 0.81376 0.98256 1.22873 1.02201 1.00882 0.95732 1.21613 0.81289 0.95561 0.95703 0.93819 1.86702 1.19972 1.33103 1.96904 1.21702 0.98663 0.94941 0.95828 0.92373 1.18949 0.95647 0.93820 0.90949 1.21606 1.24931 1.17806 0.92265 0.92780 1.25862 0.95718 0.95691 1.02361 1.70096 1.34695 1.28415 1.24059 0.85578 0.79090 0.78181 0.78973 1.19977 1.18935 1.20985 0.93648 0.92974 0.88931 0.92389 0.90979 0.92122 0.92141 0.87047 0.88164 0.90843 0.77328 0.97348 0.99026 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.13 7.21 71.98 0.52 -5.61 16 2 C 0.12 4.53 0.88 -10.76 -0.01 4.52 16 3 C -0.14 -4.94 8.55 71.98 0.62 -4.32 16 4 O -0.39 -13.39 10.24 -148.98 -1.53 -14.92 16 5 C 0.06 1.52 6.45 72.01 0.46 1.99 16 6 C -0.18 -4.76 5.83 30.69 0.18 -4.59 16 7 C 0.12 4.21 3.04 30.71 0.09 4.31 16 8 H 0.04 1.72 7.07 -2.39 -0.02 1.71 16 9 O -0.56 -19.41 8.58 -148.98 -1.28 -20.68 16 10 C -0.09 -3.93 1.58 -10.71 -0.02 -3.95 16 11 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 12 C 0.04 2.29 3.63 29.85 0.11 2.40 16 13 C -0.53 -30.03 8.45 25.60 0.22 -29.82 16 14 H 0.05 2.97 7.07 -2.91 -0.02 2.95 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.34 13.28 21.45 0.28 -57.05 16 17 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H 0.04 1.94 6.05 -2.39 -0.01 1.93 16 22 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 23 H 0.09 3.18 3.82 -2.39 -0.01 3.17 16 24 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 2.42 6.39 -2.39 -0.02 2.41 16 27 H 0.06 1.56 5.98 -2.39 -0.01 1.54 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.38 9.18 9.09 -74.06 -0.67 8.51 16 32 H 0.01 0.48 5.80 -2.39 -0.01 0.47 16 33 H -0.01 -0.49 6.27 -2.39 -0.01 -0.50 16 34 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -66.98 256.86 2.56 -64.42 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.42 Total: 16.01 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 2.63 Total: -34.56 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.80 Total: -35.60 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.98 2.56 -64.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.651 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds