Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.48051 * 2 1 4 4 O 1.42898 * 109.48293 * 239.95807 * 2 1 3 5 5 C 1.42911 * 114.09705 * 178.85922 * 4 2 1 6 6 C 1.53087 * 109.41292 * 61.15910 * 5 4 2 7 7 C 1.53176 * 109.16616 * 302.39032 * 6 5 4 8 8 H 1.08995 * 109.54250 * 176.84729 * 7 6 5 9 9 O 1.42898 * 109.54589 * 297.11784 * 7 6 5 10 10 C 1.53098 * 109.47820 * 120.01703 * 2 1 3 11 11 H 1.08999 * 109.52026 * 57.68433 * 10 2 1 12 12 C 1.53006 * 109.52077 * 297.56267 * 10 2 1 13 13 C 1.50698 * 109.46635 * 175.12794 * 12 10 2 14 14 H 1.08001 * 120.00219 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99719 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00024 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47304 * 89.99812 * 17 15 13 19 19 H 1.48502 * 109.47316 * 209.99827 * 17 15 13 20 20 H 1.48498 * 109.47149 * 329.99533 * 17 15 13 21 21 H 1.08998 * 109.47387 * 299.98201 * 1 2 3 22 22 H 1.09006 * 109.46967 * 59.98298 * 1 2 3 23 23 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47208 * 188.73650 * 3 2 1 25 25 H 1.09009 * 109.46875 * 308.73146 * 3 2 1 26 26 H 1.09002 * 109.47537 * 68.72838 * 3 2 1 27 27 H 1.08993 * 109.47897 * 181.14314 * 5 4 2 28 28 H 1.09003 * 109.47647 * 301.16611 * 5 4 2 29 29 H 1.08999 * 109.52138 * 62.29838 * 6 5 4 30 30 H 1.08998 * 109.52053 * 182.41831 * 6 5 4 31 31 H 0.96705 * 113.99412 * 299.54934 * 9 7 6 32 32 H 1.08993 * 109.46845 * 295.12392 * 12 10 2 33 33 H 1.08997 * 109.47311 * 55.12844 * 12 10 2 34 34 H 0.97005 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0066 -0.6744 -1.1662 5 6 3.4308 -0.7095 -1.2788 6 6 4.0176 -1.4600 -0.0804 7 6 3.5711 -0.7706 1.2124 8 1 3.9391 -1.3322 2.0710 9 8 4.0925 0.5593 1.2498 10 6 2.0405 -0.7221 1.2498 11 1 1.6442 -1.7372 1.2713 12 6 1.5819 0.0325 2.4993 13 6 1.9818 -0.7420 3.7287 14 1 2.5098 -1.6788 3.6288 15 6 1.6726 -0.2550 4.9810 16 7 1.0292 0.8855 5.1027 17 14 2.1677 -1.2153 6.5049 18 1 3.5195 -0.7850 6.9438 19 1 1.1891 -0.9578 7.5919 20 1 2.1879 -2.6665 6.1907 21 1 -0.3634 0.5135 0.8901 22 1 -0.3633 0.5141 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1189 1.4462 -0.1561 25 1 1.5551 1.9993 -0.8017 26 1 1.8099 1.9093 0.9576 27 1 3.7101 -1.2207 -2.2000 28 1 3.8193 0.3088 -1.2959 29 1 3.6613 -2.4901 -0.0858 30 1 5.1058 -1.4507 -0.1422 31 1 5.0583 0.6037 1.2291 32 1 2.0499 1.0166 2.5217 33 1 0.4980 0.1459 2.4780 34 1 0.8120 1.2283 5.9838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260854318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -108.057888 kcal Electronic energy + Delta-G solvation = -15778.677915 eV Core-core repulsion = 13290.241924 eV Total energy + Delta-G solvation = -2488.435991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85651 -35.85957 -34.19066 -32.43243 -31.37384 -28.82401 -26.82039 -26.06894 -23.84398 -21.29695 -21.07694 -18.24952 -16.92197 -16.03392 -15.57896 -15.34580 -14.48890 -14.24648 -13.85691 -13.06501 -12.91866 -12.74999 -12.12458 -11.87901 -11.74815 -11.39459 -11.22273 -10.99780 -10.93774 -10.72730 -10.59540 -10.37981 -10.00677 -9.53348 -9.34974 -9.19264 -8.97611 -8.43534 -8.26203 -5.95325 -3.95910 3.32409 3.39087 3.41530 4.28451 4.48479 4.88789 5.21488 5.34657 5.39354 5.42374 5.53959 5.69451 5.79301 5.82885 6.05347 6.22497 6.26318 6.32416 6.37156 6.41645 6.58765 6.70724 6.85522 6.87266 7.04997 7.12509 7.72684 7.84163 7.94635 8.08748 8.27634 8.47600 9.09737 9.66125 11.15916 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.010139 C = 0.009186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.191447 B = 2760.948036 C = 3047.236984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.116 3.884 3 C -0.175 4.175 4 O -0.387 6.387 5 C 0.066 3.934 6 C -0.191 4.191 7 C 0.116 3.884 8 H 0.064 0.936 9 O -0.544 6.544 10 C -0.093 4.093 11 H 0.070 0.930 12 C 0.030 3.970 13 C -0.514 4.514 14 H 0.051 0.949 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.356 0.644 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -1.921 -9.993 11.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.078 3.922 3 C -0.232 4.232 4 O -0.306 6.306 5 C -0.011 4.011 6 C -0.229 4.229 7 C 0.057 3.943 8 H 0.081 0.919 9 O -0.348 6.348 10 C -0.111 4.111 11 H 0.088 0.912 12 C -0.006 4.006 13 C -0.552 4.552 14 H 0.069 0.931 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.970 -1.737 -9.970 10.871 hybrid contribution 1.115 -0.694 1.139 1.738 sum 5.085 -2.431 -8.832 10.477 Atomic orbital electron populations 1.21809 0.93187 1.02160 1.02130 1.21552 0.94098 0.91895 0.84649 1.22591 1.02926 0.95598 1.02047 1.87862 1.20136 1.77981 1.44655 1.22357 0.82338 0.99516 0.96896 1.22973 1.00423 1.01218 0.98299 1.21778 0.95429 0.82999 0.94093 0.91855 1.86764 1.23808 1.27396 1.96804 1.21837 0.92112 1.00349 0.96844 0.91167 1.19192 0.96296 0.96125 0.89035 1.21205 1.36445 1.06401 0.91143 0.93108 1.24967 0.95405 0.95029 0.98892 1.69958 1.40626 1.19507 1.23253 0.86681 0.78254 0.80349 0.83201 1.20830 1.21287 1.20035 0.90066 0.93092 0.92592 0.89898 0.94604 0.90511 0.90305 0.92700 0.90866 0.91696 0.79839 0.94649 0.96294 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.55 37.16 0.32 -2.14 16 2 C 0.12 2.22 0.88 -90.57 -0.08 2.14 16 3 C -0.17 -3.25 7.21 37.16 0.27 -2.99 16 4 O -0.39 -7.03 10.24 -35.23 -0.36 -7.39 16 5 C 0.07 0.99 6.44 37.20 0.24 1.23 16 6 C -0.19 -2.84 5.84 -26.60 -0.16 -3.00 16 7 C 0.12 2.14 3.03 -26.55 -0.08 2.06 16 8 H 0.06 1.26 7.07 -51.93 -0.37 0.90 16 9 O -0.54 -9.71 8.57 -35.23 -0.30 -10.02 16 10 C -0.09 -1.95 1.58 -90.47 -0.14 -2.10 16 11 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.03 0.77 3.63 -27.88 -0.10 0.67 16 13 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 14 H 0.05 1.38 7.08 -52.49 -0.37 1.01 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H 0.08 1.55 6.39 -51.93 -0.33 1.22 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.48 3.81 -51.93 -0.20 1.29 16 25 H 0.03 0.60 8.13 -51.92 -0.42 0.18 16 26 H 0.08 1.60 6.05 -51.93 -0.31 1.29 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.81 5.98 -51.93 -0.31 0.50 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.36 4.70 9.09 45.56 0.41 5.11 16 32 H 0.04 0.98 5.81 -51.93 -0.30 0.68 16 33 H 0.02 0.51 6.26 -51.93 -0.33 0.19 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 256.87 15.07 3.87 3.87 Total: -1.00 -30.84 256.87 -5.40 -36.24 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.20 Total: 3.88 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.12 Total: -17.17 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.66 Total: -17.41 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.84 -5.40 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.821 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds