Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.48051 * 2 1 4 4 O 1.42898 * 109.48293 * 239.95807 * 2 1 3 5 5 C 1.42911 * 114.09705 * 178.85922 * 4 2 1 6 6 C 1.53087 * 109.41292 * 61.15910 * 5 4 2 7 7 C 1.53176 * 109.16616 * 302.39032 * 6 5 4 8 8 H 1.08995 * 109.54250 * 176.84729 * 7 6 5 9 9 O 1.42898 * 109.54589 * 297.11784 * 7 6 5 10 10 C 1.53098 * 109.47820 * 120.01703 * 2 1 3 11 11 H 1.08999 * 109.52026 * 57.68433 * 10 2 1 12 12 C 1.53006 * 109.52077 * 297.56267 * 10 2 1 13 13 C 1.50698 * 109.46635 * 175.12794 * 12 10 2 14 14 H 1.08001 * 120.00219 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99719 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00024 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47304 * 89.99812 * 17 15 13 19 19 H 1.48502 * 109.47316 * 209.99827 * 17 15 13 20 20 H 1.48498 * 109.47149 * 329.99533 * 17 15 13 21 21 H 1.08998 * 109.47387 * 299.98201 * 1 2 3 22 22 H 1.09006 * 109.46967 * 59.98298 * 1 2 3 23 23 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47208 * 188.73650 * 3 2 1 25 25 H 1.09009 * 109.46875 * 308.73146 * 3 2 1 26 26 H 1.09002 * 109.47537 * 68.72838 * 3 2 1 27 27 H 1.08993 * 109.47897 * 181.14314 * 5 4 2 28 28 H 1.09003 * 109.47647 * 301.16611 * 5 4 2 29 29 H 1.08999 * 109.52138 * 62.29838 * 6 5 4 30 30 H 1.08998 * 109.52053 * 182.41831 * 6 5 4 31 31 H 0.96705 * 113.99412 * 299.54934 * 9 7 6 32 32 H 1.08993 * 109.46845 * 295.12392 * 12 10 2 33 33 H 1.08997 * 109.47311 * 55.12844 * 12 10 2 34 34 H 0.97005 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0066 -0.6744 -1.1662 5 6 3.4308 -0.7095 -1.2788 6 6 4.0176 -1.4600 -0.0804 7 6 3.5711 -0.7706 1.2124 8 1 3.9391 -1.3322 2.0710 9 8 4.0925 0.5593 1.2498 10 6 2.0405 -0.7221 1.2498 11 1 1.6442 -1.7372 1.2713 12 6 1.5819 0.0325 2.4993 13 6 1.9818 -0.7420 3.7287 14 1 2.5098 -1.6788 3.6288 15 6 1.6726 -0.2550 4.9810 16 7 1.0292 0.8855 5.1027 17 14 2.1677 -1.2153 6.5049 18 1 3.5195 -0.7850 6.9438 19 1 1.1891 -0.9578 7.5919 20 1 2.1879 -2.6665 6.1907 21 1 -0.3634 0.5135 0.8901 22 1 -0.3633 0.5141 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1189 1.4462 -0.1561 25 1 1.5551 1.9993 -0.8017 26 1 1.8099 1.9093 0.9576 27 1 3.7101 -1.2207 -2.2000 28 1 3.8193 0.3088 -1.2959 29 1 3.6613 -2.4901 -0.0858 30 1 5.1058 -1.4507 -0.1422 31 1 5.0583 0.6037 1.2291 32 1 2.0499 1.0166 2.5217 33 1 0.4980 0.1459 2.4780 34 1 0.8120 1.2283 5.9838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260854318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -130.028374 kcal Electronic energy + Delta-G solvation = -15779.630627 eV Core-core repulsion = 13290.241924 eV Total energy + Delta-G solvation = -2489.388703 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31253 -37.28476 -35.91906 -34.31382 -32.85084 -30.52989 -28.34133 -27.74264 -25.60842 -23.01747 -22.49439 -19.76293 -18.79343 -17.62054 -17.04477 -16.87516 -16.41513 -15.74283 -15.27763 -14.71930 -14.36269 -14.27014 -14.00722 -13.46171 -13.20881 -13.18074 -12.87729 -12.65232 -12.49819 -12.42521 -12.12603 -11.98908 -11.74524 -11.26231 -11.19087 -10.82836 -10.54196 -10.44851 -9.96594 -8.14621 -6.22850 1.38645 1.39541 1.49993 2.41941 2.94189 3.18485 3.54064 3.91611 3.97730 4.01341 4.13363 4.28665 4.42724 4.58005 4.78778 4.79505 4.85584 4.88458 4.94122 5.02642 5.11020 5.20196 5.26788 5.30315 5.36854 5.57280 5.62972 5.83780 5.97354 6.30108 6.47999 6.91968 7.10293 7.43695 8.96949 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.010139 C = 0.009186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.191447 B = 2760.948036 C = 3047.236984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.120 3.880 3 C -0.167 4.167 4 O -0.394 6.394 5 C 0.057 3.943 6 C -0.179 4.179 7 C 0.117 3.883 8 H 0.044 0.956 9 O -0.560 6.560 10 C -0.092 4.092 11 H 0.058 0.942 12 C 0.043 3.957 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.265 1.265 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.378 0.622 32 H 0.008 0.992 33 H -0.008 1.008 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -2.950 -11.024 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.082 3.918 3 C -0.224 4.224 4 O -0.314 6.314 5 C -0.019 4.019 6 C -0.217 4.217 7 C 0.058 3.942 8 H 0.062 0.938 9 O -0.367 6.367 10 C -0.111 4.111 11 H 0.076 0.924 12 C 0.006 3.994 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.189 1.189 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.227 0.773 32 H 0.026 0.974 33 H 0.010 0.990 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.470 -2.776 -11.017 12.610 hybrid contribution 0.680 -0.348 1.426 1.618 sum 6.150 -3.124 -9.591 11.814 Atomic orbital electron populations 1.21781 0.93076 1.02318 1.02125 1.21382 0.94393 0.91831 0.84244 1.22487 1.03772 0.95298 1.00813 1.87852 1.22322 1.77740 1.43481 1.22673 0.80546 1.00392 0.98257 1.22870 1.02612 1.00471 0.95737 1.21606 0.93431 0.83419 0.95710 0.93837 1.86705 1.25983 1.27077 1.96900 1.21705 0.94578 0.99019 0.95826 0.92372 1.18949 0.94272 0.95193 0.90948 1.21605 1.36105 1.06624 0.92270 0.92780 1.25865 0.95400 0.96010 1.02362 1.70100 1.41891 1.21221 1.24057 0.85577 0.78034 0.79237 0.78966 1.19980 1.20984 1.18935 0.92122 0.90981 0.92393 0.88917 0.92983 0.93647 0.87056 0.92136 0.90839 0.88161 0.77326 0.97354 0.99018 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.55 71.98 0.62 -4.33 16 2 C 0.12 4.52 0.88 -10.76 -0.01 4.51 16 3 C -0.17 -6.13 7.21 71.98 0.52 -5.61 16 4 O -0.39 -13.39 10.24 -148.98 -1.53 -14.92 16 5 C 0.06 1.52 6.44 72.01 0.46 1.98 16 6 C -0.18 -4.76 5.84 30.68 0.18 -4.58 16 7 C 0.12 4.21 3.03 30.71 0.09 4.31 16 8 H 0.04 1.72 7.07 -2.39 -0.02 1.70 16 9 O -0.56 -19.39 8.57 -148.98 -1.28 -20.66 16 10 C -0.09 -3.93 1.58 -10.70 -0.02 -3.95 16 11 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 12 C 0.04 2.29 3.63 29.85 0.11 2.40 16 13 C -0.53 -30.03 8.46 25.60 0.22 -29.82 16 14 H 0.05 2.97 7.08 -2.91 -0.02 2.95 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 17 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H 0.06 2.42 6.39 -2.39 -0.02 2.41 16 22 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 23 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.09 3.18 3.81 -2.39 -0.01 3.17 16 25 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 26 H 0.04 1.94 6.05 -2.39 -0.01 1.93 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 1.56 5.98 -2.39 -0.01 1.55 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.38 9.17 9.09 -74.05 -0.67 8.50 16 32 H 0.01 0.48 5.81 -2.39 -0.01 0.46 16 33 H -0.01 -0.48 6.26 -2.39 -0.01 -0.50 16 34 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -66.98 256.87 2.56 -64.42 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.42 Total: 16.00 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 2.63 Total: -34.56 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -2.80 Total: -35.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.98 2.56 -64.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.609 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds