Wall clock time and date at job start Mon Mar 30 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46707 * 2 1 4 4 H 1.09002 * 109.49170 * 55.03554 * 3 2 1 5 5 O 1.42904 * 109.48406 * 294.99872 * 3 2 1 6 6 C 1.42899 * 114.09711 * 178.85853 * 5 3 2 7 7 C 1.53098 * 109.41440 * 61.16120 * 6 5 3 8 8 C 1.53177 * 109.21356 * 302.35638 * 7 6 5 9 9 H 1.09001 * 109.54414 * 176.87772 * 8 7 6 10 10 O 1.42898 * 109.54804 * 297.14639 * 8 7 6 11 11 C 1.53100 * 109.47879 * 175.05409 * 3 2 1 12 12 H 1.08994 * 109.52304 * 297.56676 * 11 3 2 13 13 C 1.53007 * 109.51811 * 57.68881 * 11 3 2 14 14 C 1.50699 * 109.46825 * 184.99898 * 13 11 3 15 15 H 1.08000 * 119.99960 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99644 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00328 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99874 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47115 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46982 * 120.00238 * 18 16 14 21 21 H 1.48502 * 109.47402 * 240.00321 * 18 16 14 22 22 H 1.09005 * 109.47498 * 300.00219 * 1 2 3 23 23 H 1.09005 * 109.47344 * 60.00042 * 1 2 3 24 24 H 1.08993 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47255 * 240.00563 * 2 1 3 26 26 H 1.08997 * 109.47054 * 120.00003 * 2 1 3 27 27 H 1.08999 * 109.48542 * 301.17828 * 6 5 3 28 28 H 1.09000 * 109.48175 * 181.14161 * 6 5 3 29 29 H 1.09002 * 109.52244 * 62.29577 * 7 6 5 30 30 H 1.09004 * 109.52508 * 182.42105 * 7 6 5 31 31 H 0.96700 * 113.99606 * 299.99929 * 10 8 7 32 32 H 1.08998 * 109.46964 * 305.00138 * 13 11 3 33 33 H 1.08995 * 109.46855 * 64.99656 * 13 11 3 34 34 H 0.96997 * 120.00098 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6059 1.9817 0.8421 5 8 1.6620 2.0817 -1.2210 6 6 2.0686 3.4485 -1.3142 7 6 3.5956 3.5311 -1.2427 8 6 4.0746 2.8896 0.0632 9 1 5.1641 2.8957 0.0943 10 8 3.5587 3.6251 1.1745 11 6 3.5658 1.4447 0.1244 12 1 3.8544 0.9961 1.0750 13 6 4.1737 0.6398 -1.0262 14 6 5.6652 0.5389 -0.8355 15 1 6.1327 1.0021 0.0208 16 6 6.4327 -0.1456 -1.7538 17 7 5.8633 -0.7101 -2.7964 18 14 8.2815 -0.2701 -1.5180 19 1 8.6714 0.4451 -0.2764 20 1 8.6715 -1.6989 -1.4089 21 1 8.9714 0.3439 -2.6809 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6349 4.0139 -0.4894 28 1 1.7259 3.8658 -2.2611 29 1 4.0293 2.9999 -2.0900 30 1 3.9056 4.5758 -1.2704 31 1 3.8343 4.5518 1.1948 32 1 3.7404 -0.3603 -1.0386 33 1 3.9611 1.1396 -1.9711 34 1 6.4033 -1.1913 -3.4426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260862850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:32 Heat of formation + Delta-G solvation = -142.647211 kcal Electronic energy + Delta-G solvation = -15493.326515 eV Core-core repulsion = 13003.390618 eV Total energy + Delta-G solvation = -2489.935897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98669 -37.34813 -35.78709 -34.66978 -33.29820 -31.25955 -28.65925 -25.97694 -25.10959 -23.92418 -22.19076 -19.89570 -18.64333 -17.66873 -17.18744 -17.00552 -16.38031 -16.07036 -15.70323 -14.74994 -14.62958 -14.34777 -14.04834 -13.42373 -13.27112 -13.17625 -12.79438 -12.58195 -12.49574 -12.36945 -12.16974 -11.77261 -11.66494 -11.56643 -11.21631 -10.92905 -10.70306 -10.48436 -10.00444 -8.17150 -6.26953 1.37629 1.38856 1.50892 2.40465 2.98186 3.14732 3.41914 3.82625 4.03128 4.06580 4.15789 4.27777 4.34266 4.51030 4.61737 4.70461 4.74695 4.86222 4.92741 5.06169 5.13039 5.13285 5.21129 5.26539 5.43540 5.48254 5.57947 5.77481 5.91066 6.26526 6.47240 6.89088 6.95438 7.40920 8.94192 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.010407 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.856829 B = 2689.879706 C = 3124.292188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.108 3.892 4 H 0.062 0.938 5 O -0.396 6.396 6 C 0.067 3.933 7 C -0.181 4.181 8 C 0.118 3.882 9 H 0.049 0.951 10 O -0.576 6.576 11 C -0.102 4.102 12 H 0.058 0.942 13 C 0.046 3.954 14 C -0.533 4.533 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.279 1.279 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.390 0.610 32 H -0.001 1.001 33 H 0.002 0.998 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 8.206 5.388 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.080 0.920 5 O -0.315 6.315 6 C -0.010 4.010 7 C -0.219 4.219 8 C 0.060 3.940 9 H 0.067 0.933 10 O -0.384 6.384 11 C -0.120 4.120 12 H 0.076 0.924 13 C 0.009 3.991 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.782 3.218 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.204 1.204 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.239 0.761 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.096 7.440 5.234 11.537 hybrid contribution 1.667 0.240 -0.254 1.703 sum -5.429 7.680 4.980 10.642 Atomic orbital electron populations 1.21645 0.93686 1.02031 1.02039 1.21607 0.97627 0.94528 1.02070 1.22037 0.92760 0.93798 0.86359 0.91986 1.87846 1.78324 1.25775 1.39588 1.22564 0.93049 0.82761 1.02586 1.22796 0.98300 1.02114 0.98693 1.21607 0.96449 0.90961 0.85028 0.93341 1.86436 1.76556 1.27605 1.47758 1.21730 0.95843 0.94616 0.99851 0.92380 1.18911 0.93861 0.93730 0.92640 1.21663 0.93959 1.33269 1.08208 0.92637 1.25871 1.03311 0.95277 0.94978 1.70112 1.37238 1.36390 1.13325 0.85528 0.80061 0.77921 0.78332 1.18757 1.20601 1.20449 0.91828 0.92943 0.91738 0.93210 0.90590 0.91731 0.87969 0.92430 0.88475 0.76132 0.98300 0.97965 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.81 71.98 0.71 -3.19 16 2 C -0.12 -4.35 5.08 30.60 0.16 -4.19 16 3 C 0.11 4.08 2.18 30.63 0.07 4.15 16 4 H 0.06 2.20 7.82 -2.39 -0.02 2.18 16 5 O -0.40 -15.24 9.46 -148.98 -1.41 -16.65 16 6 C 0.07 2.09 6.69 72.01 0.48 2.57 16 7 C -0.18 -6.10 5.47 30.69 0.17 -5.94 16 8 C 0.12 4.41 3.17 30.76 0.10 4.51 16 9 H 0.05 1.99 6.91 -2.39 -0.02 1.97 16 10 O -0.58 -17.72 12.29 -148.98 -1.83 -19.55 16 11 C -0.10 -4.37 1.92 -10.65 -0.02 -4.39 16 12 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 13 C 0.05 2.41 3.84 29.85 0.11 2.52 16 14 C -0.53 -30.08 8.37 25.60 0.21 -29.87 16 15 H 0.06 3.05 7.10 -2.91 -0.02 3.03 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 18 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.05 1.55 7.82 -2.38 -0.02 1.54 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 2.09 6.57 -2.39 -0.02 2.07 16 26 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.06 1.77 7.82 -2.39 -0.02 1.75 16 28 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.06 2.38 6.51 -2.39 -0.02 2.37 16 30 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.39 7.94 9.08 -74.06 -0.67 7.26 16 32 H 0.00 -0.07 6.23 -2.39 -0.01 -0.09 16 33 H 0.00 0.12 6.04 -2.39 -0.01 0.10 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.36 266.94 1.93 -64.43 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.41 Total: 15.01 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.45 Total: -33.18 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.28 Total: -56.50 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -3.24 Total: -36.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.36 1.93 -64.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.212 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds