Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47071 * 2 1 4 4 H 1.09000 * 109.47574 * 54.97696 * 3 2 1 5 5 O 1.42908 * 109.48975 * 294.95440 * 3 2 1 6 6 C 1.42908 * 114.09710 * 178.85237 * 5 3 2 7 7 C 1.53087 * 109.41368 * 61.15441 * 6 5 3 8 8 C 1.53178 * 109.16773 * 302.39166 * 7 6 5 9 9 H 1.08996 * 109.54883 * 176.85186 * 8 7 6 10 10 O 1.42899 * 109.53971 * 297.11889 * 8 7 6 11 11 C 1.53089 * 109.48473 * 175.00299 * 3 2 1 12 12 H 1.08997 * 109.52230 * 57.63207 * 11 3 2 13 13 C 1.53000 * 109.51789 * 297.51260 * 11 3 2 14 14 C 1.50708 * 109.46973 * 174.99757 * 13 11 3 15 15 H 1.07991 * 119.99789 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46849 * 299.99442 * 1 2 3 24 24 H 1.08994 * 109.47340 * 59.99772 * 1 2 3 25 25 H 1.08997 * 109.46940 * 240.00749 * 2 1 3 26 26 H 1.08994 * 109.47340 * 120.00228 * 2 1 3 27 27 H 1.08999 * 109.47869 * 181.13557 * 6 5 3 28 28 H 1.09000 * 109.47805 * 301.15999 * 6 5 3 29 29 H 1.09006 * 109.52505 * 62.29641 * 7 6 5 30 30 H 1.08998 * 109.52315 * 182.48281 * 7 6 5 31 31 H 0.96706 * 113.99958 * 299.55021 * 10 8 7 32 32 H 1.08994 * 109.48028 * 54.99815 * 13 11 3 33 33 H 1.09000 * 109.47206 * 294.99669 * 13 11 3 34 34 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9817 0.8416 5 8 1.6631 2.0815 -1.2214 6 6 2.0698 3.4483 -1.3146 7 6 3.5967 3.5310 -1.2416 8 6 4.0733 2.8886 0.0647 9 1 5.1628 2.8939 0.0975 10 8 3.5564 3.6243 1.1755 11 6 3.5658 1.4447 0.1257 12 1 3.9995 0.8703 -0.6928 13 6 3.9695 0.8167 1.4612 14 6 5.4710 0.7071 1.5312 15 1 6.0765 1.0514 0.7059 16 6 6.0715 0.1684 2.6492 17 7 7.3818 0.0732 2.7106 18 14 5.0241 -0.4264 4.0770 19 1 4.8120 0.6892 5.0339 20 1 5.7161 -1.5450 4.7664 21 1 3.7114 -0.8964 3.5658 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7280 3.8655 -2.2618 28 1 1.6351 4.0138 -0.4903 29 1 4.0312 2.9996 -2.0884 30 1 3.9066 4.5756 -1.2681 31 1 3.8382 4.5491 1.2001 32 1 3.5286 -0.1766 1.5438 33 1 3.6123 1.4419 2.2795 34 1 7.8042 -0.3062 3.4970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260862852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = -141.698681 kcal Electronic energy + Delta-G solvation = -15438.557756 eV Core-core repulsion = 12948.662991 eV Total energy + Delta-G solvation = -2489.894766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.92246 -37.38447 -35.96772 -34.59219 -33.28422 -31.66282 -29.05339 -26.08719 -25.09942 -22.81174 -22.10223 -20.83090 -19.08580 -17.76088 -17.25263 -16.89278 -16.25421 -15.78708 -15.45597 -14.85039 -14.64353 -14.48397 -14.37280 -14.05919 -13.38423 -13.04556 -12.91828 -12.54068 -12.46311 -12.16001 -12.08396 -11.81770 -11.70463 -11.48841 -11.33388 -11.01942 -10.76224 -10.71286 -10.06119 -8.27761 -6.28994 1.35207 1.35575 1.47715 2.36612 2.90722 3.08027 3.47121 3.79611 3.90320 3.96678 4.11001 4.26171 4.31230 4.48664 4.62226 4.63489 4.75274 4.81913 4.89411 4.99776 5.04615 5.11761 5.15250 5.17640 5.25738 5.42102 5.53283 5.61511 5.68470 6.26676 6.38491 6.75758 6.99135 7.34059 8.88790 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.030068 B = 0.011135 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.986336 B = 2514.099576 C = 3098.635300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.107 3.893 4 H 0.053 0.947 5 O -0.392 6.392 6 C 0.065 3.935 7 C -0.180 4.180 8 C 0.115 3.885 9 H 0.036 0.964 10 O -0.571 6.571 11 C -0.094 4.094 12 H 0.063 0.937 13 C 0.002 3.998 14 C -0.514 4.514 15 H 0.033 0.967 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.247 1.247 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.385 0.615 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 5.939 -6.086 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.050 3.950 4 H 0.071 0.929 5 O -0.312 6.312 6 C -0.012 4.012 7 C -0.218 4.218 8 C 0.056 3.944 9 H 0.054 0.946 10 O -0.378 6.378 11 C -0.113 4.113 12 H 0.082 0.918 13 C -0.035 4.035 14 C -0.553 4.553 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.594 5.594 18 Si 0.768 3.232 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.170 1.170 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.348 5.210 -6.002 15.535 hybrid contribution 1.010 0.358 0.791 1.332 sum -12.338 5.568 -5.211 14.505 Atomic orbital electron populations 1.21658 0.93780 1.02183 1.02016 1.21669 0.97726 0.94125 1.02597 1.22007 0.92445 0.94149 0.86402 0.92874 1.87820 1.78661 1.25753 1.38928 1.22612 0.93008 0.82635 1.02923 1.22878 0.98351 1.02783 0.97791 1.21633 0.96039 0.91320 0.85431 0.94615 1.86490 1.75337 1.27465 1.48472 1.21616 0.96011 0.94788 0.98890 0.91814 1.19453 0.94343 0.95575 0.94118 1.21365 0.91994 1.39473 1.02421 0.94871 1.25908 0.95961 0.95833 1.01404 1.70058 1.10779 1.47793 1.30727 0.85748 0.79940 0.78315 0.79208 1.19684 1.20956 1.17048 0.91482 0.92848 0.92141 0.91540 0.91028 0.86761 0.92655 0.90821 0.88359 0.76629 0.95935 0.96450 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.81 71.98 0.71 -2.85 16 2 C -0.12 -3.94 5.48 30.60 0.17 -3.78 16 3 C 0.11 3.75 1.99 30.62 0.06 3.81 16 4 H 0.05 1.93 7.82 -2.39 -0.02 1.92 16 5 O -0.39 -12.47 9.95 -148.98 -1.48 -13.96 16 6 C 0.06 1.65 6.69 72.01 0.48 2.14 16 7 C -0.18 -4.90 5.84 30.68 0.18 -4.72 16 8 C 0.11 4.22 3.04 30.71 0.09 4.31 16 9 H 0.04 1.53 7.08 -2.39 -0.02 1.52 16 10 O -0.57 -19.96 11.40 -148.98 -1.70 -21.65 16 11 C -0.09 -3.86 1.67 -10.71 -0.02 -3.87 16 12 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 13 C 0.00 0.12 3.26 29.85 0.10 0.21 16 14 C -0.51 -29.99 9.01 25.60 0.23 -29.76 16 15 H 0.03 2.11 7.33 -2.92 -0.02 2.09 16 16 C 0.01 0.31 5.47 84.65 0.46 0.77 16 17 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 18 Si 0.94 45.64 27.47 68.60 1.88 47.52 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 2.43 6.16 -2.39 -0.01 2.42 16 27 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 1.39 7.82 -2.39 -0.02 1.37 16 29 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.39 9.59 9.09 -74.05 -0.67 8.91 16 32 H 0.02 1.07 5.22 -2.39 -0.01 1.06 16 33 H 0.02 0.86 6.88 -2.39 -0.02 0.84 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -68.64 266.30 1.81 -66.83 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.35 Total: 15.22 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 2.46 Total: -33.74 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -3.18 Total: -35.61 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -68.64 1.81 -66.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.871 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds