Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.48178 * 55.00126 * 3 2 1 5 5 O 1.42908 * 109.48273 * 294.97939 * 3 2 1 6 6 C 1.42902 * 114.09870 * 178.85670 * 5 3 2 7 7 C 1.53093 * 109.41426 * 61.16151 * 6 5 3 8 8 C 1.53184 * 109.15936 * 302.38602 * 7 6 5 9 9 H 1.08998 * 109.54182 * 297.02737 * 8 7 6 10 10 O 1.42899 * 109.53882 * 176.84747 * 8 7 6 11 11 C 1.53092 * 109.48501 * 175.02302 * 3 2 1 12 12 H 1.08993 * 109.52039 * 297.50169 * 11 3 2 13 13 C 1.53003 * 109.51655 * 57.68604 * 11 3 2 14 14 C 1.50704 * 109.46821 * 185.00157 * 13 11 3 15 15 H 1.08000 * 119.99914 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99823 * 180.02562 * 14 13 11 17 17 N 1.31519 * 120.00333 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47040 * 90.00012 * 18 16 14 20 20 H 1.48491 * 109.47347 * 209.99785 * 18 16 14 21 21 H 1.48503 * 109.47032 * 330.00463 * 18 16 14 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09003 * 109.47699 * 181.14182 * 6 5 3 28 28 H 1.09000 * 109.48196 * 301.16034 * 6 5 3 29 29 H 1.08997 * 109.52363 * 62.29236 * 7 6 5 30 30 H 1.08996 * 109.51941 * 182.48427 * 7 6 5 31 31 H 0.96703 * 114.00247 * 60.00142 * 10 8 7 32 32 H 1.09004 * 109.47415 * 304.99942 * 13 11 3 33 33 H 1.09001 * 109.47454 * 65.00342 * 13 11 3 34 34 H 0.96993 * 119.99702 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9817 0.8418 5 8 1.6625 2.0815 -1.2212 6 6 2.0691 3.4483 -1.3146 7 6 3.5961 3.5309 -1.2426 8 6 4.0733 2.8886 0.0637 9 1 3.6808 3.4507 0.9110 10 8 5.5017 2.8954 0.1057 11 6 3.5658 1.4447 0.1252 12 1 3.8538 0.9974 1.0765 13 6 4.1742 0.6396 -1.0249 14 6 5.6656 0.5387 -0.8335 15 1 6.1327 1.0021 0.0230 16 6 6.4338 -0.1451 -1.7518 17 7 5.8649 -0.7098 -2.7945 18 14 8.2825 -0.2696 -1.5149 19 1 8.5990 -1.4824 -0.7186 20 1 8.9463 -0.3605 -2.8401 21 1 8.7719 0.9351 -0.7976 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.7267 3.8654 -2.2616 28 1 1.6349 4.0138 -0.4901 29 1 4.0300 2.9996 -2.0896 30 1 3.9059 4.5756 -1.2692 31 1 5.8922 3.7791 0.0636 32 1 3.7410 -0.3606 -1.0373 33 1 3.9622 1.1391 -1.9702 34 1 6.4054 -1.1906 -3.4406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260862854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = -111.122490 kcal Electronic energy + Delta-G solvation = -15566.176244 eV Core-core repulsion = 13077.607361 eV Total energy + Delta-G solvation = -2488.568883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.45203 -35.99869 -33.91546 -32.70494 -31.41564 -29.87461 -26.83843 -24.36219 -23.19769 -22.21647 -20.77973 -18.31226 -16.78866 -16.00985 -15.72572 -15.53085 -14.36366 -14.11016 -13.77238 -13.54519 -13.18324 -12.81955 -12.25652 -12.01591 -11.50245 -11.37425 -11.06896 -10.98037 -10.78805 -10.70508 -10.41455 -10.19201 -9.87921 -9.78414 -9.36783 -9.00698 -8.66979 -8.52808 -8.09842 -5.75844 -3.70547 3.44543 3.50468 3.56184 4.26269 4.66529 4.86331 5.24111 5.40722 5.45660 5.54208 5.56284 5.62243 5.69304 5.74848 5.80733 5.88903 6.08500 6.13898 6.27264 6.39990 6.49492 6.59724 6.65910 6.77977 6.83032 7.20842 7.76776 7.90703 8.03272 8.24844 8.49781 8.73799 9.39647 9.89122 11.36432 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.010829 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.409795 B = 2585.134573 C = 3032.492463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.100 3.900 4 H 0.041 0.959 5 O -0.373 6.373 6 C 0.070 3.930 7 C -0.189 4.189 8 C 0.120 3.880 9 H 0.028 0.972 10 O -0.519 6.519 11 C -0.111 4.111 12 H 0.069 0.931 13 C 0.036 3.964 14 C -0.482 4.482 15 H 0.075 0.925 16 C 0.046 3.954 17 N -0.907 5.907 18 Si 0.887 3.113 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.275 1.275 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.345 0.655 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 7.400 5.336 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.059 0.941 5 O -0.292 6.292 6 C -0.008 4.008 7 C -0.227 4.227 8 C 0.061 3.939 9 H 0.046 0.954 10 O -0.322 6.322 11 C -0.130 4.130 12 H 0.087 0.913 13 C -0.001 4.001 14 C -0.521 4.521 15 H 0.093 0.907 16 C -0.152 4.152 17 N -0.549 5.549 18 Si 0.716 3.284 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.200 1.200 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.190 0.810 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.081 6.549 5.081 11.576 hybrid contribution 1.355 0.775 0.171 1.570 sum -6.726 7.324 5.252 11.246 Atomic orbital electron populations 1.21729 0.96220 1.00923 1.01500 1.21570 0.95228 0.94854 1.03755 1.22152 0.94279 0.93597 0.85731 0.94110 1.87906 1.78097 1.24013 1.39156 1.22379 0.93803 0.83714 1.00858 1.22971 0.97041 1.00589 1.02110 1.21579 0.82451 0.96513 0.93385 0.95436 1.87208 1.18108 1.30150 1.96718 1.21944 0.92878 0.94963 1.03167 0.91252 1.19121 0.95257 0.94005 0.91684 1.21506 0.92207 1.29909 1.08464 0.90744 1.25005 0.97904 0.96592 0.95713 1.69988 1.34958 1.37111 1.12864 0.86675 0.86760 0.78078 0.76875 1.21259 1.21834 1.20030 0.93175 0.93668 0.92234 0.90934 0.89701 0.89521 0.94359 0.88658 0.92217 0.81046 0.96442 0.95856 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.81 37.16 0.36 -1.70 16 2 C -0.12 -2.00 5.08 -26.73 -0.14 -2.13 16 3 C 0.10 1.80 2.33 -26.68 -0.06 1.74 16 4 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 5 O -0.37 -6.97 9.46 -35.23 -0.33 -7.30 16 6 C 0.07 1.09 6.84 37.21 0.25 1.35 16 7 C -0.19 -3.27 5.41 -26.59 -0.14 -3.42 16 8 C 0.12 2.25 3.24 -26.55 -0.09 2.17 16 9 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 10 O -0.52 -10.64 9.76 -35.23 -0.34 -10.98 16 11 C -0.11 -2.32 2.11 -90.48 -0.19 -2.51 16 12 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.04 0.94 3.84 -27.88 -0.11 0.83 16 14 C -0.48 -13.85 7.72 -34.44 -0.27 -14.11 16 15 H 0.07 2.14 5.80 -52.49 -0.30 1.84 16 16 C 0.05 1.36 5.46 -17.82 -0.10 1.27 16 17 N -0.91 -28.21 13.29 55.43 0.74 -27.47 16 18 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.68 6.57 -51.93 -0.34 1.33 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 2.02 6.51 -51.93 -0.34 1.68 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.34 5.35 9.08 45.56 0.41 5.76 16 32 H 0.02 0.49 6.24 -51.93 -0.32 0.16 16 33 H 0.02 0.66 6.04 -51.93 -0.31 0.35 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 264.84 15.07 3.99 3.99 Total: -1.00 -32.49 264.84 -5.99 -38.49 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.55 Total: 2.08 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.47 Total: -16.52 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.74 Total: -27.47 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.68 Total: -18.28 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.49 -5.99 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.637 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds