Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.48178 * 55.00126 * 3 2 1 5 5 O 1.42908 * 109.48273 * 294.97939 * 3 2 1 6 6 C 1.42902 * 114.09870 * 178.85670 * 5 3 2 7 7 C 1.53093 * 109.41426 * 61.16151 * 6 5 3 8 8 C 1.53184 * 109.15936 * 302.38602 * 7 6 5 9 9 H 1.08998 * 109.54182 * 297.02737 * 8 7 6 10 10 O 1.42899 * 109.53882 * 176.84747 * 8 7 6 11 11 C 1.53092 * 109.48501 * 175.02302 * 3 2 1 12 12 H 1.08993 * 109.52039 * 297.50169 * 11 3 2 13 13 C 1.53003 * 109.51655 * 57.68604 * 11 3 2 14 14 C 1.50704 * 109.46821 * 185.00157 * 13 11 3 15 15 H 1.08000 * 119.99914 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99823 * 180.02562 * 14 13 11 17 17 N 1.31519 * 120.00333 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47040 * 90.00012 * 18 16 14 20 20 H 1.48491 * 109.47347 * 209.99785 * 18 16 14 21 21 H 1.48503 * 109.47032 * 330.00463 * 18 16 14 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09003 * 109.47699 * 181.14182 * 6 5 3 28 28 H 1.09000 * 109.48196 * 301.16034 * 6 5 3 29 29 H 1.08997 * 109.52363 * 62.29236 * 7 6 5 30 30 H 1.08996 * 109.51941 * 182.48427 * 7 6 5 31 31 H 0.96703 * 114.00247 * 60.00142 * 10 8 7 32 32 H 1.09004 * 109.47415 * 304.99942 * 13 11 3 33 33 H 1.09001 * 109.47454 * 65.00342 * 13 11 3 34 34 H 0.96993 * 119.99702 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9817 0.8418 5 8 1.6625 2.0815 -1.2212 6 6 2.0691 3.4483 -1.3146 7 6 3.5961 3.5309 -1.2426 8 6 4.0733 2.8886 0.0637 9 1 3.6808 3.4507 0.9110 10 8 5.5017 2.8954 0.1057 11 6 3.5658 1.4447 0.1252 12 1 3.8538 0.9974 1.0765 13 6 4.1742 0.6396 -1.0249 14 6 5.6656 0.5387 -0.8335 15 1 6.1327 1.0021 0.0230 16 6 6.4338 -0.1451 -1.7518 17 7 5.8649 -0.7098 -2.7945 18 14 8.2825 -0.2696 -1.5149 19 1 8.5990 -1.4824 -0.7186 20 1 8.9463 -0.3605 -2.8401 21 1 8.7719 0.9351 -0.7976 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.7267 3.8654 -2.2616 28 1 1.6349 4.0138 -0.4901 29 1 4.0300 2.9996 -2.0896 30 1 3.9059 4.5756 -1.2692 31 1 5.8922 3.7791 0.0636 32 1 3.7410 -0.3606 -1.0373 33 1 3.9622 1.1391 -1.9702 34 1 6.4054 -1.1906 -3.4406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260862854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = -134.777435 kcal Electronic energy + Delta-G solvation = -15567.201999 eV Core-core repulsion = 13077.607361 eV Total energy + Delta-G solvation = -2489.594638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91026 -37.48805 -35.52226 -34.54964 -33.12086 -31.34310 -28.75520 -25.69330 -25.00584 -23.89827 -22.13805 -19.90289 -18.61405 -17.80472 -17.19518 -16.99937 -16.35411 -15.63889 -15.24883 -15.04007 -14.52516 -14.19020 -14.02657 -13.74626 -13.11907 -13.05660 -12.73922 -12.67316 -12.43793 -12.36379 -12.02044 -11.71488 -11.61001 -11.27620 -11.12757 -10.73751 -10.39433 -10.30775 -10.23173 -8.03355 -6.04753 1.39937 1.41020 1.53182 2.50463 2.95556 3.27758 3.49627 3.90864 4.04531 4.08918 4.20927 4.23876 4.38564 4.49168 4.52146 4.60576 4.76542 4.85549 4.99738 5.00530 5.13763 5.16077 5.20534 5.32145 5.49769 5.54542 5.73919 5.88238 6.02101 6.43240 6.52596 7.10191 7.23992 7.59464 9.09345 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.010829 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.409795 B = 2585.134573 C = 3032.492463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.105 3.895 4 H 0.077 0.923 5 O -0.396 6.396 6 C 0.065 3.935 7 C -0.183 4.183 8 C 0.117 3.883 9 H 0.067 0.933 10 O -0.553 6.553 11 C -0.112 4.112 12 H 0.062 0.938 13 C 0.049 3.951 14 C -0.487 4.487 15 H 0.076 0.924 16 C -0.015 4.015 17 N -0.948 5.948 18 Si 0.955 3.045 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.265 1.265 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.368 0.632 32 H -0.014 1.014 33 H -0.009 1.009 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 9.152 7.023 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.094 0.906 5 O -0.316 6.316 6 C -0.012 4.012 7 C -0.221 4.221 8 C 0.058 3.942 9 H 0.085 0.915 10 O -0.359 6.359 11 C -0.131 4.131 12 H 0.081 0.919 13 C 0.012 3.988 14 C -0.526 4.526 15 H 0.094 0.906 16 C -0.209 4.209 17 N -0.592 5.592 18 Si 0.782 3.218 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.189 1.189 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.215 0.785 32 H 0.005 0.995 33 H 0.009 0.991 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.541 8.324 6.782 13.720 hybrid contribution 1.490 0.260 -0.357 1.554 sum -7.051 8.584 6.425 12.833 Atomic orbital electron populations 1.21649 0.93499 1.02016 1.02239 1.21577 0.97627 0.94444 1.02064 1.22155 0.92029 0.94352 0.86752 0.90573 1.87891 1.78098 1.25841 1.39744 1.22632 0.92591 0.82702 1.03257 1.22889 0.98204 1.01727 0.99292 1.21679 0.81793 0.95251 0.95448 0.91532 1.87074 1.19390 1.32530 1.96888 1.21891 0.95240 0.95931 1.00062 0.91938 1.18875 0.94405 0.92943 0.92606 1.21890 0.93654 1.28984 1.08031 0.90630 1.25893 1.02888 0.96567 0.95585 1.70144 1.36714 1.38338 1.13964 0.85592 0.80926 0.78461 0.76855 1.20527 1.21667 1.18930 0.92028 0.91251 0.93003 0.90308 0.93803 0.87989 0.90757 0.93716 0.88712 0.78512 0.99538 0.99072 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.81 71.98 0.71 -2.91 16 2 C -0.12 -4.08 5.08 30.59 0.16 -3.93 16 3 C 0.10 3.61 2.33 30.62 0.07 3.68 16 4 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 5 O -0.40 -14.37 9.46 -148.98 -1.41 -15.78 16 6 C 0.06 1.86 6.84 72.01 0.49 2.35 16 7 C -0.18 -6.03 5.41 30.69 0.17 -5.86 16 8 C 0.12 4.15 3.24 30.71 0.10 4.25 16 9 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 10 O -0.55 -21.92 9.76 -148.98 -1.45 -23.37 16 11 C -0.11 -4.67 2.11 -10.70 -0.02 -4.69 16 12 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 13 C 0.05 2.64 3.84 29.85 0.11 2.75 16 14 C -0.49 -28.62 7.72 25.60 0.20 -28.43 16 15 H 0.08 4.37 5.80 -2.91 -0.02 4.36 16 16 C -0.02 -0.91 5.46 84.65 0.46 -0.45 16 17 N -0.95 -61.11 13.29 21.45 0.28 -60.82 16 18 Si 0.96 47.41 29.54 68.60 2.03 49.44 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.44 7.82 -2.39 -0.02 1.43 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.04 1.83 6.57 -2.39 -0.02 1.81 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.93 6.51 -2.39 -0.02 1.91 16 30 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.37 10.63 9.08 -74.06 -0.67 9.95 16 32 H -0.01 -0.81 6.24 -2.39 -0.01 -0.83 16 33 H -0.01 -0.54 6.04 -2.39 -0.01 -0.56 16 34 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -72.74 264.84 2.30 -70.45 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.41 Total: 13.33 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 2.44 Total: -33.23 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.28 Total: -60.82 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -2.86 Total: -39.15 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -72.74 2.30 -70.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.330 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds