Wall clock time and date at job start Mon Mar 30 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 H 1.09006 * 109.47958 * 55.02253 * 3 2 1 5 5 O 1.42898 * 109.48309 * 294.99419 * 3 2 1 6 6 C 1.42897 * 114.10001 * 178.84735 * 5 3 2 7 7 C 1.53089 * 109.41656 * 61.16248 * 6 5 3 8 8 C 1.53176 * 109.16219 * 302.39053 * 7 6 5 9 9 H 1.09004 * 109.54565 * 297.11436 * 8 7 6 10 10 O 1.42899 * 109.54818 * 176.84914 * 8 7 6 11 11 C 1.53094 * 109.49164 * 175.04681 * 3 2 1 12 12 H 1.09004 * 109.51815 * 57.68915 * 11 3 2 13 13 C 1.53007 * 109.52286 * 297.50441 * 11 3 2 14 14 C 1.50697 * 109.47107 * 175.30908 * 13 11 3 15 15 H 1.08002 * 119.99784 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99973 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47030 * 89.99795 * 18 16 14 20 20 H 1.48497 * 109.47294 * 209.99971 * 18 16 14 21 21 H 1.48501 * 109.47070 * 330.00093 * 18 16 14 22 22 H 1.09000 * 109.46683 * 60.00070 * 1 2 3 23 23 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47311 * 300.00261 * 1 2 3 25 25 H 1.08998 * 109.47622 * 239.99715 * 2 1 3 26 26 H 1.09000 * 109.46683 * 119.99929 * 2 1 3 27 27 H 1.09002 * 109.48425 * 301.17758 * 6 5 3 28 28 H 1.09002 * 109.48369 * 181.14801 * 6 5 3 29 29 H 1.08997 * 109.52675 * 182.48845 * 7 6 5 30 30 H 1.08994 * 109.57561 * 62.32552 * 7 6 5 31 31 H 0.96696 * 113.99740 * 59.99289 * 10 8 7 32 32 H 1.08993 * 109.46895 * 295.31534 * 13 11 3 33 33 H 1.09004 * 109.46945 * 55.31362 * 13 11 3 34 34 H 0.97003 * 119.99956 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8420 5 8 1.6622 2.0815 -1.2210 6 6 2.0687 3.4483 -1.3142 7 6 3.5956 3.5312 -1.2425 8 6 4.0732 2.8888 0.0634 9 1 3.6796 3.4497 0.9111 10 8 5.5016 2.8958 0.1053 11 6 3.5659 1.4448 0.1246 12 1 3.9991 0.8714 -0.6950 13 6 3.9708 0.8167 1.4597 14 6 5.4726 0.7143 1.5318 15 1 6.0777 1.0628 0.7078 16 6 6.0741 0.1767 2.6498 17 7 5.3372 -0.2472 3.6533 18 14 7.9357 0.0505 2.7394 19 1 8.4874 1.2897 3.3436 20 1 8.3130 -1.1179 3.5747 21 1 8.4866 -0.1208 1.3711 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6348 4.0137 -0.4895 28 1 1.7260 3.8657 -2.2611 29 1 3.9054 4.5759 -1.2690 30 1 4.0303 3.0008 -2.0897 31 1 5.8919 3.7795 0.0633 32 1 3.6093 1.4388 2.2784 33 1 3.5345 -0.1790 1.5400 34 1 5.7604 -0.6257 4.4398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260862855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:37 Heat of formation + Delta-G solvation = -117.038002 kcal Electronic energy + Delta-G solvation = -15351.121578 eV Core-core repulsion = 12862.296179 eV Total energy + Delta-G solvation = -2488.825398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40765 -36.08112 -34.23409 -32.68630 -31.50754 -30.12274 -26.80182 -24.43095 -23.44090 -21.36040 -20.72594 -19.43819 -17.01377 -16.13385 -15.67660 -15.05367 -14.44884 -14.39341 -13.79791 -13.58510 -13.31316 -12.77586 -12.53693 -12.01868 -11.59182 -11.54294 -11.13596 -10.90987 -10.76807 -10.72753 -10.47222 -10.34777 -10.11417 -9.65563 -9.47419 -9.27473 -8.74376 -8.63336 -8.18071 -5.83408 -3.78990 3.42110 3.47666 3.53335 4.14284 4.61442 4.80230 5.10828 5.25337 5.32576 5.48105 5.53542 5.55923 5.64911 5.73262 5.84175 5.93235 5.97578 6.09683 6.27740 6.33115 6.41412 6.46141 6.54221 6.74168 6.87835 7.02002 7.64306 7.76069 7.83209 8.17931 8.44697 8.65255 9.32938 9.82311 11.29108 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032615 B = 0.010198 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.283280 B = 2745.034198 C = 3445.453245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.096 3.904 4 H 0.053 0.947 5 O -0.385 6.385 6 C 0.068 3.932 7 C -0.192 4.192 8 C 0.120 3.880 9 H 0.044 0.956 10 O -0.525 6.525 11 C -0.104 4.104 12 H 0.072 0.928 13 C 0.029 3.971 14 C -0.488 4.488 15 H 0.078 0.922 16 C 0.047 3.953 17 N -0.908 5.908 18 Si 0.892 3.108 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.276 1.276 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.349 0.651 32 H 0.012 0.988 33 H 0.022 0.978 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 6.425 -7.897 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.039 3.961 4 H 0.071 0.929 5 O -0.305 6.305 6 C -0.009 4.009 7 C -0.230 4.230 8 C 0.060 3.940 9 H 0.062 0.938 10 O -0.327 6.327 11 C -0.123 4.123 12 H 0.090 0.910 13 C -0.007 4.007 14 C -0.526 4.526 15 H 0.096 0.904 16 C -0.152 4.152 17 N -0.550 5.550 18 Si 0.721 3.279 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.201 1.201 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.936 5.585 -7.839 11.864 hybrid contribution 1.315 0.826 0.360 1.594 sum -5.621 6.411 -7.479 11.342 Atomic orbital electron populations 1.21719 0.96112 1.00965 1.01585 1.21613 0.95493 0.94630 1.03661 1.22278 0.94507 0.93766 0.85523 0.92930 1.87852 1.78662 1.24057 1.39884 1.22375 0.93434 0.83907 1.01167 1.23061 0.97488 1.01132 1.01324 1.21665 0.82250 0.96895 0.93148 0.93807 1.87067 1.18364 1.30565 1.96724 1.21920 0.92566 0.94636 1.03155 0.90976 1.19170 0.97201 0.95419 0.88947 1.21506 0.91675 1.37004 1.02455 0.90364 1.25023 0.97708 0.96366 0.96090 1.69975 1.34734 1.43435 1.06813 0.86600 0.86585 0.77071 0.77673 1.21129 1.21778 1.20059 0.92583 0.93151 0.93186 0.91508 0.89155 0.93720 0.89558 0.91695 0.90698 0.80674 0.97007 0.95942 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.81 37.16 0.36 -1.72 16 2 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16 3 C 0.10 1.75 2.14 -26.68 -0.06 1.69 16 4 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 5 O -0.39 -6.53 9.94 -35.23 -0.35 -6.88 16 6 C 0.07 0.96 6.84 37.20 0.25 1.22 16 7 C -0.19 -2.85 5.76 -26.59 -0.15 -3.00 16 8 C 0.12 2.25 2.95 -26.55 -0.08 2.17 16 9 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 10 O -0.52 -10.60 10.03 -35.23 -0.35 -10.96 16 11 C -0.10 -2.19 1.72 -90.48 -0.16 -2.34 16 12 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 13 C 0.03 0.76 4.28 -27.88 -0.12 0.64 16 14 C -0.49 -13.95 7.95 -34.44 -0.27 -14.22 16 15 H 0.08 2.25 5.71 -52.49 -0.30 1.95 16 16 C 0.05 1.37 5.46 -17.82 -0.10 1.27 16 17 N -0.91 -27.78 13.29 55.43 0.74 -27.04 16 18 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.09 1.67 6.17 -51.93 -0.32 1.35 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.35 5.26 9.08 45.56 0.41 5.67 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.60 6.18 -51.93 -0.32 0.28 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 269.33 15.07 4.06 4.06 Total: -1.00 -31.87 269.33 -6.11 -37.98 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.72 Total: 1.68 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.46 Total: -16.43 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.74 Total: -27.04 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.70 Total: -17.83 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.87 -6.11 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.057 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds