Wall clock time and date at job start Mon Mar 30 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 H 1.09006 * 109.47958 * 55.02253 * 3 2 1 5 5 O 1.42898 * 109.48309 * 294.99419 * 3 2 1 6 6 C 1.42897 * 114.10001 * 178.84735 * 5 3 2 7 7 C 1.53089 * 109.41656 * 61.16248 * 6 5 3 8 8 C 1.53176 * 109.16219 * 302.39053 * 7 6 5 9 9 H 1.09004 * 109.54565 * 297.11436 * 8 7 6 10 10 O 1.42899 * 109.54818 * 176.84914 * 8 7 6 11 11 C 1.53094 * 109.49164 * 175.04681 * 3 2 1 12 12 H 1.09004 * 109.51815 * 57.68915 * 11 3 2 13 13 C 1.53007 * 109.52286 * 297.50441 * 11 3 2 14 14 C 1.50697 * 109.47107 * 175.30908 * 13 11 3 15 15 H 1.08002 * 119.99784 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99973 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47030 * 89.99795 * 18 16 14 20 20 H 1.48497 * 109.47294 * 209.99971 * 18 16 14 21 21 H 1.48501 * 109.47070 * 330.00093 * 18 16 14 22 22 H 1.09000 * 109.46683 * 60.00070 * 1 2 3 23 23 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47311 * 300.00261 * 1 2 3 25 25 H 1.08998 * 109.47622 * 239.99715 * 2 1 3 26 26 H 1.09000 * 109.46683 * 119.99929 * 2 1 3 27 27 H 1.09002 * 109.48425 * 301.17758 * 6 5 3 28 28 H 1.09002 * 109.48369 * 181.14801 * 6 5 3 29 29 H 1.08997 * 109.52675 * 182.48845 * 7 6 5 30 30 H 1.08994 * 109.57561 * 62.32552 * 7 6 5 31 31 H 0.96696 * 113.99740 * 59.99289 * 10 8 7 32 32 H 1.08993 * 109.46895 * 295.31534 * 13 11 3 33 33 H 1.09004 * 109.46945 * 55.31362 * 13 11 3 34 34 H 0.97003 * 119.99956 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8420 5 8 1.6622 2.0815 -1.2210 6 6 2.0687 3.4483 -1.3142 7 6 3.5956 3.5312 -1.2425 8 6 4.0732 2.8888 0.0634 9 1 3.6796 3.4497 0.9111 10 8 5.5016 2.8958 0.1053 11 6 3.5659 1.4448 0.1246 12 1 3.9991 0.8714 -0.6950 13 6 3.9708 0.8167 1.4597 14 6 5.4726 0.7143 1.5318 15 1 6.0777 1.0628 0.7078 16 6 6.0741 0.1767 2.6498 17 7 5.3372 -0.2472 3.6533 18 14 7.9357 0.0505 2.7394 19 1 8.4874 1.2897 3.3436 20 1 8.3130 -1.1179 3.5747 21 1 8.4866 -0.1208 1.3711 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6348 4.0137 -0.4895 28 1 1.7260 3.8657 -2.2611 29 1 3.9054 4.5759 -1.2690 30 1 4.0303 3.0008 -2.0897 31 1 5.8919 3.7795 0.0633 32 1 3.6093 1.4388 2.2784 33 1 3.5345 -0.1790 1.5400 34 1 5.7604 -0.6257 4.4398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260862855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:37 Heat of formation + Delta-G solvation = -139.677298 kcal Electronic energy + Delta-G solvation = -15352.103291 eV Core-core repulsion = 12862.296179 eV Total energy + Delta-G solvation = -2489.807112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.82961 -37.56469 -35.85050 -34.51798 -33.15497 -31.56613 -28.65770 -25.76376 -25.23357 -22.97270 -22.10675 -21.02042 -18.80730 -17.78021 -17.21643 -16.68411 -16.22499 -15.83792 -15.41064 -14.96305 -14.62901 -14.23046 -14.06860 -13.86313 -13.30450 -12.95397 -12.81296 -12.69304 -12.40267 -12.21857 -12.12290 -11.90289 -11.70329 -11.30898 -11.21407 -10.84314 -10.59741 -10.40565 -10.23215 -8.08352 -6.10631 1.40246 1.41382 1.53076 2.48277 2.86575 3.23850 3.40890 3.86324 3.94251 4.00332 4.14235 4.19656 4.41706 4.45349 4.50094 4.63619 4.77784 4.84451 4.88873 4.98525 5.05623 5.15695 5.16839 5.23217 5.35143 5.45438 5.65282 5.75225 5.94814 6.31030 6.45351 7.03736 7.19446 7.54821 9.04294 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032615 B = 0.010198 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.283280 B = 2745.034198 C = 3445.453245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.106 3.894 4 H 0.052 0.948 5 O -0.390 6.390 6 C 0.060 3.940 7 C -0.178 4.178 8 C 0.116 3.884 9 H 0.040 0.960 10 O -0.555 6.555 11 C -0.100 4.100 12 H 0.052 0.948 13 C 0.037 3.963 14 C -0.498 4.498 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.944 5.944 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.269 1.269 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.371 0.629 32 H -0.014 1.014 33 H 0.001 0.999 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 7.750 -9.186 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.049 3.951 4 H 0.070 0.930 5 O -0.309 6.309 6 C -0.017 4.017 7 C -0.216 4.216 8 C 0.057 3.943 9 H 0.058 0.942 10 O -0.361 6.361 11 C -0.119 4.119 12 H 0.070 0.930 13 C 0.000 4.000 14 C -0.536 4.536 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.587 5.587 18 Si 0.785 3.215 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.194 1.194 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.004 0.996 33 H 0.019 0.981 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.053 6.935 -9.146 13.472 hybrid contribution 1.352 0.451 0.747 1.609 sum -5.702 7.386 -8.400 12.555 Atomic orbital electron populations 1.21652 0.93520 1.02215 1.02117 1.21583 0.97779 0.93935 1.02324 1.22048 0.92169 0.94561 0.86341 0.92964 1.87847 1.78531 1.25776 1.38777 1.22714 0.92841 0.82550 1.03566 1.22924 0.97989 1.02554 0.98115 1.21676 0.81770 0.95386 0.95504 0.94239 1.86951 1.19291 1.32908 1.96970 1.21782 0.94988 0.95857 0.99240 0.92987 1.19008 0.95887 0.94211 0.90899 1.21852 0.93115 1.36387 1.02277 0.90566 1.25883 1.02573 0.96231 0.95879 1.70107 1.36671 1.44460 1.07428 0.85541 0.80834 0.77278 0.77848 1.20266 1.21364 1.19411 0.91798 0.91627 0.92782 0.91781 0.91571 0.92412 0.86165 0.88250 0.91472 0.78116 0.99598 0.98063 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.81 71.98 0.71 -3.03 16 2 C -0.12 -4.08 5.48 30.59 0.17 -3.92 16 3 C 0.11 3.82 2.14 30.62 0.07 3.89 16 4 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 5 O -0.39 -12.39 9.94 -148.98 -1.48 -13.87 16 6 C 0.06 1.48 6.84 72.01 0.49 1.97 16 7 C -0.18 -4.78 5.76 30.68 0.18 -4.60 16 8 C 0.12 4.25 2.95 30.71 0.09 4.34 16 9 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 10 O -0.56 -22.06 10.03 -148.98 -1.49 -23.56 16 11 C -0.10 -4.26 1.72 -10.70 -0.02 -4.28 16 12 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 13 C 0.04 1.97 4.28 29.85 0.13 2.10 16 14 C -0.50 -29.06 7.95 25.60 0.20 -28.86 16 15 H 0.08 4.43 5.71 -2.91 -0.02 4.41 16 16 C -0.01 -0.63 5.46 84.65 0.46 -0.16 16 17 N -0.94 -59.06 13.29 21.44 0.28 -58.78 16 18 Si 0.96 46.81 29.54 68.60 2.03 48.83 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.57 6.17 -2.39 -0.01 2.56 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.37 10.63 9.08 -74.06 -0.67 9.95 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.00 0.07 6.18 -2.38 -0.01 0.05 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -69.19 269.33 2.21 -66.98 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.40 Total: 12.95 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 2.47 Total: -32.56 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.28 Total: -58.78 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -2.97 Total: -37.43 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -69.19 2.21 -66.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260862855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.696 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds