Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49129 * 2 1 4 4 C 1.53091 * 109.47862 * 120.03017 * 2 1 3 5 5 C 1.53176 * 109.21206 * 177.62293 * 4 2 1 6 6 H 1.08995 * 109.54674 * 62.85906 * 5 4 2 7 7 O 1.42904 * 109.53894 * 183.12051 * 5 4 2 8 8 C 1.53174 * 109.04061 * 302.98570 * 5 4 2 9 9 H 1.09001 * 109.51989 * 297.07828 * 8 5 4 10 10 C 1.52996 * 109.52508 * 176.95256 * 8 5 4 11 11 C 1.50700 * 109.46870 * 175.00060 * 10 8 5 12 12 H 1.07997 * 120.00403 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99787 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00000 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47382 * 60.00012 * 15 13 11 17 17 H 1.48506 * 109.46798 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47065 * 299.99664 * 15 13 11 19 19 C 1.53097 * 109.16185 * 56.97999 * 8 5 4 20 20 O 1.42902 * 109.41493 * 302.39739 * 19 8 5 21 21 H 1.08995 * 109.47155 * 299.97273 * 1 2 3 22 22 H 1.09011 * 109.46982 * 59.97379 * 1 2 3 23 23 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46897 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46893 * 300.03088 * 3 2 1 26 26 H 1.09004 * 109.47002 * 60.02467 * 3 2 1 27 27 H 1.09002 * 109.52401 * 57.68445 * 4 2 1 28 28 H 1.09004 * 109.52068 * 297.56090 * 4 2 1 29 29 H 0.96696 * 114.00380 * 299.99743 * 7 5 4 30 30 H 1.08995 * 109.46815 * 294.99983 * 10 8 5 31 31 H 1.09000 * 109.46941 * 55.00251 * 10 8 5 32 32 H 0.97000 * 120.00170 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47580 * 62.37620 * 19 8 5 34 34 H 1.08994 * 109.47934 * 182.41016 * 19 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2137 6 1 3.9689 0.2435 1.2425 7 8 4.0524 -1.5070 2.3400 8 6 4.0190 -1.4606 -0.0785 9 1 3.6627 -2.4907 -0.0840 10 6 5.5466 -1.4476 -0.1620 11 6 5.9904 -2.2323 -1.3696 12 1 5.2563 -2.6945 -2.0130 13 6 7.3336 -2.3603 -1.6532 14 7 8.2276 -1.7970 -0.8701 15 14 7.8836 -3.3325 -3.1505 16 1 7.3152 -2.7170 -4.3766 17 1 9.3664 -3.3199 -3.2315 18 1 7.4067 -4.7339 -3.0333 19 6 3.4333 -0.7103 -1.2777 20 8 2.0091 -0.6751 -1.1664 21 1 -0.3633 0.5134 0.8902 22 1 -0.3633 0.5143 -0.8898 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1305 1.4419 -0.0005 25 1 1.6769 1.9564 -0.8897 26 1 1.6777 1.9562 0.8902 27 1 1.6442 -1.7375 1.2709 28 1 1.7138 -0.1849 2.1399 29 1 3.7995 -1.1298 3.1937 30 1 5.8970 -0.4191 -0.2483 31 1 5.9636 -1.8992 0.7381 32 1 9.1726 -1.8867 -1.0698 33 1 3.8219 0.3079 -1.2943 34 1 3.7135 -1.2216 -2.1985 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260875940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -119.059942 kcal Electronic energy + Delta-G solvation = -15291.742980 eV Core-core repulsion = 12802.829904 eV Total energy + Delta-G solvation = -2488.913076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.79342 -36.28695 -34.12851 -32.88178 -31.65079 -28.53681 -27.45084 -25.83820 -23.97577 -22.09070 -20.34468 -18.69539 -16.91317 -16.35279 -15.87537 -15.26652 -14.73319 -14.41938 -13.65719 -13.27445 -12.91791 -12.80489 -12.46933 -12.11130 -11.94634 -11.82649 -11.56221 -11.33465 -11.05733 -10.83205 -10.70549 -10.40009 -10.09499 -9.99443 -9.55940 -9.12916 -8.92187 -8.84276 -8.29190 -5.95958 -3.98317 3.36182 3.40323 3.43180 4.13185 4.48710 4.65413 4.93371 5.02049 5.12345 5.38761 5.39637 5.48318 5.65505 5.69903 5.76826 5.85125 5.89771 5.93818 6.05872 6.14304 6.28821 6.37052 6.42028 6.70867 6.88615 7.03110 7.68201 7.77736 7.88770 8.05043 8.13263 8.44915 9.08278 9.65172 11.15211 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042305 B = 0.008348 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.701265 B = 3353.127807 C = 3702.429299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.113 3.887 3 C -0.182 4.182 4 C -0.173 4.173 5 C 0.106 3.894 6 H 0.051 0.949 7 O -0.554 6.554 8 C -0.106 4.106 9 H 0.071 0.929 10 C 0.033 3.967 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.073 3.927 20 O -0.383 6.383 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.363 0.637 30 H 0.013 0.987 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.795 5.527 3.774 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 C -0.239 4.239 4 C -0.211 4.211 5 C 0.047 3.953 6 H 0.069 0.931 7 O -0.357 6.357 8 C -0.124 4.124 9 H 0.089 0.911 10 C -0.004 4.004 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.002 4.002 20 O -0.302 6.302 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.208 0.792 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.468 5.092 3.177 13.837 hybrid contribution 0.403 -0.040 -0.111 0.420 sum -12.065 5.052 3.066 13.435 Atomic orbital electron populations 1.21738 0.93014 1.02560 1.01934 1.21341 0.94297 0.91096 0.85906 1.22481 1.02669 0.96560 1.02179 1.22954 0.98233 1.01906 0.98042 1.22041 0.90545 0.94759 0.87932 0.93092 1.86687 1.78436 1.55077 1.15541 1.21858 1.00957 0.99230 0.90392 0.91059 1.19024 0.86695 0.97027 0.97656 1.21230 0.91731 1.32818 1.10155 0.92625 1.25011 0.96896 0.95774 0.96647 1.69962 1.01115 1.44428 1.37862 0.86688 0.77411 0.80729 0.83363 1.20229 1.21329 1.20244 1.22744 0.78165 0.99574 0.99751 1.87944 1.22950 1.77109 1.42226 0.91638 0.91983 0.91978 0.91380 0.91910 0.92013 0.90637 0.91731 0.79171 0.96912 0.95203 0.92996 0.93344 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.85 37.16 0.33 -1.25 16 2 C 0.11 1.65 1.11 -90.57 -0.10 1.55 16 3 C -0.18 -2.38 7.94 37.16 0.29 -2.08 16 4 C -0.17 -2.55 4.54 -26.59 -0.12 -2.67 16 5 C 0.11 1.91 2.65 -26.55 -0.07 1.83 16 6 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 7 O -0.55 -10.16 12.72 -35.23 -0.45 -10.61 16 8 C -0.11 -2.28 2.05 -90.48 -0.19 -2.47 16 9 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 10 C 0.03 0.87 4.40 -27.88 -0.12 0.75 16 11 C -0.52 -14.84 8.45 -34.44 -0.29 -15.13 16 12 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 C 0.07 1.45 5.58 37.21 0.21 1.66 16 20 O -0.38 -6.90 10.24 -35.23 -0.36 -7.26 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.99 4.98 -51.93 -0.26 0.73 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.36 4.61 9.08 45.56 0.41 5.03 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.87 7.65 -51.93 -0.40 0.47 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.92 6.34 -51.93 -0.33 0.59 16 34 H 0.11 2.23 7.05 -51.93 -0.37 1.86 16 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -31.86 268.52 -5.80 -37.66 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.59 Total: 2.01 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.16 Total: -16.23 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.81 Total: -17.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.86 -5.80 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260875940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.405 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds