Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38507 * 120.02091 * 2 1 4 4 C 1.38332 * 120.10738 * 179.97438 * 3 2 1 5 5 C 1.37951 * 120.36680 * 0.02562 * 4 3 2 6 6 C 1.39688 * 119.90031 * 359.97438 * 5 4 3 7 7 C 1.37501 * 120.02586 * 179.72251 * 2 1 3 8 8 C 1.50938 * 133.21207 * 359.97438 * 7 2 1 9 9 C 1.51080 * 105.46282 * 180.02562 * 8 7 2 10 10 C 1.32163 * 108.27864 * 359.47301 * 9 8 7 11 11 C 1.50702 * 124.46722 * 179.90269 * 10 9 8 12 12 C 1.50692 * 109.46970 * 95.80763 * 11 10 9 13 13 H 1.08003 * 120.00588 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00177 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00389 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46803 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47157 * 120.00227 * 16 14 12 19 19 H 1.48500 * 109.47397 * 240.00421 * 16 14 12 20 20 H 1.09002 * 109.47152 * 89.99957 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00058 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00038 * 1 2 3 23 23 H 1.08001 * 119.95319 * 359.95885 * 3 2 1 24 24 H 1.07994 * 119.81507 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.05002 * 179.97438 * 5 4 3 26 26 H 1.08997 * 110.24606 * 299.02696 * 8 7 2 27 27 H 1.09003 * 110.24352 * 61.02807 * 8 7 2 28 28 H 1.08002 * 125.86310 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47253 * 215.81312 * 11 10 9 30 30 H 1.09002 * 109.46729 * 335.81159 * 11 10 9 31 31 H 0.96997 * 120.00309 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1993 0.0000 4 6 3.5833 1.2013 0.0005 5 6 4.2825 0.0121 0.0005 6 6 3.5915 -1.2019 0.0005 7 6 2.1951 -1.1905 0.0058 8 6 1.7598 -2.6357 0.0133 9 6 3.0379 -3.4413 0.0175 10 6 4.0577 -2.6008 0.0016 11 6 5.5061 -3.0171 0.0021 12 6 6.0231 -3.0379 -1.4132 13 1 5.3687 -2.7755 -2.2312 14 6 7.3322 -3.3910 -1.6638 15 7 8.1295 -3.7101 -0.6677 16 14 7.9735 -3.4161 -3.4181 17 1 6.8860 -3.0190 -4.3483 18 1 9.1054 -2.4633 -3.5451 19 1 8.4388 -4.7853 -3.7556 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6596 2.1343 -0.0007 24 1 4.1189 2.1391 0.0001 25 1 5.3625 0.0197 0.0005 26 1 1.1762 -2.8492 0.9087 27 1 1.1763 -2.8585 -0.8801 28 1 3.1064 -4.5191 0.0227 29 1 6.0877 -2.3081 0.5911 30 1 5.5978 -4.0124 0.4371 31 1 9.0503 -3.9588 -0.8440 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260884302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = 10.518171 kcal Electronic energy + Delta-G solvation = -13404.550033 eV Core-core repulsion = 11228.564805 eV Total energy + Delta-G solvation = -2175.985228 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22962 -37.29610 -35.18258 -33.80613 -31.57392 -29.60687 -27.75989 -27.04817 -24.51734 -22.55126 -21.86593 -19.19359 -18.52803 -16.97424 -16.32142 -16.21110 -15.77227 -15.50670 -14.52768 -14.41543 -14.15992 -13.88616 -13.55243 -13.21153 -12.97371 -12.92925 -12.68896 -12.60411 -12.43109 -12.00065 -11.69378 -11.63055 -11.35119 -10.64249 -10.37896 -9.45447 -8.87898 -8.23286 -6.36848 0.12519 0.52307 1.34865 1.35725 1.49261 1.72160 2.38033 3.02689 3.06526 3.62586 3.82445 4.07986 4.14220 4.19129 4.47749 4.66946 4.70618 4.80063 4.86064 4.92168 4.95257 4.99358 5.11937 5.26981 5.28187 5.34430 5.60412 5.65406 5.70493 5.82809 5.88590 6.07537 6.20403 6.24377 6.75660 7.31675 8.86414 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.038679 B = 0.007893 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.726464 B = 3546.762206 C = 3823.777263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.075 4.075 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.120 4.120 8 C -0.045 4.045 9 C -0.185 4.185 10 C -0.094 4.094 11 C 0.067 3.933 12 C -0.525 4.525 13 H 0.049 0.951 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.272 1.272 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.158 0.842 24 H 0.144 0.856 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.144 0.856 29 H -0.007 1.007 30 H 0.003 0.997 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 7.623 0.761 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.148 4.148 6 C -0.084 4.084 7 C -0.120 4.120 8 C -0.080 4.080 9 C -0.203 4.203 10 C -0.094 4.094 11 C 0.031 3.969 12 C -0.563 4.563 13 H 0.067 0.933 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.197 1.197 20 H 0.097 0.903 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.176 0.824 24 H 0.161 0.839 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.162 0.838 29 H 0.012 0.988 30 H 0.022 0.978 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.088 7.575 0.805 16.902 hybrid contribution 1.478 -0.334 -0.632 1.641 sum -13.611 7.241 0.173 15.418 Atomic orbital electron populations 1.20791 0.88339 1.03916 1.03192 1.19535 0.97740 0.90689 0.99557 1.21383 0.93511 0.98310 1.01034 1.21217 0.95222 0.97107 1.00453 1.21049 0.99461 0.92598 1.01681 1.20031 0.95099 0.92945 1.00300 1.20694 0.93228 0.96321 1.01744 1.19854 0.96120 0.88057 1.03972 1.23692 0.94080 0.99188 1.03324 1.21193 0.96573 0.92396 0.99195 1.17776 0.88538 0.94525 0.96098 1.21346 0.96306 1.45820 0.92816 0.93261 1.25946 0.96985 0.94617 1.01879 1.70091 1.06858 1.47038 1.33178 0.85387 0.78281 0.78230 0.79116 1.19123 1.20039 1.19705 0.90274 0.89717 0.90836 0.82440 0.83863 0.88520 0.86487 0.87070 0.83849 0.98843 0.97842 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.93 71.24 0.71 -1.17 16 2 C -0.08 -2.06 5.87 -19.97 -0.12 -2.17 16 3 C -0.12 -3.27 9.72 22.36 0.22 -3.05 16 4 C -0.12 -3.82 10.02 22.22 0.22 -3.60 16 5 C -0.13 -5.32 10.08 22.55 0.23 -5.09 16 6 C -0.08 -3.61 6.17 -20.16 -0.12 -3.73 16 7 C -0.12 -4.10 6.14 -19.62 -0.12 -4.22 16 8 C -0.04 -1.34 6.36 29.30 0.19 -1.15 16 9 C -0.19 -7.24 10.90 24.80 0.27 -6.97 16 10 C -0.09 -4.45 5.33 -18.43 -0.10 -4.55 16 11 C 0.07 3.87 5.38 29.10 0.16 4.03 16 12 C -0.52 -31.66 9.09 25.60 0.23 -31.43 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 16 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 22 H 0.07 1.18 7.82 -2.38 -0.02 1.17 16 23 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 24 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 25 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 26 H 0.12 2.81 8.14 -2.39 -0.02 2.80 16 27 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.00 0.20 8.12 -2.39 -0.02 0.18 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.76 269.47 5.63 -65.12 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.10 Total: 7.21 kcal Atomic # 6 Polarization: -64.66 SS G_CDS: 2.22 Total: -62.44 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -70.76 5.63 -65.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.642 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds