Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38362 * 119.94593 * 2 1 4 4 C 1.37905 * 120.37402 * 179.97438 * 3 2 1 5 5 C 1.39726 * 119.89485 * 0.02562 * 4 3 2 6 6 C 1.39611 * 119.18255 * 0.21510 * 5 4 3 7 7 C 1.37542 * 120.49219 * 0.02562 * 6 5 4 8 8 C 1.50928 * 106.30369 * 180.26144 * 6 5 4 9 9 C 1.51090 * 105.46066 * 359.72656 * 8 6 5 10 10 C 1.32154 * 108.27108 * 0.02562 * 9 8 6 11 11 C 1.50699 * 124.46820 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46817 * 95.02261 * 11 10 9 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47361 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47264 * 120.00115 * 16 14 12 19 19 H 1.48500 * 109.46969 * 239.99720 * 16 14 12 20 20 H 1.08998 * 109.47121 * 90.00454 * 1 2 3 21 21 H 1.09006 * 109.46729 * 210.00430 * 1 2 3 22 22 H 1.08997 * 109.47120 * 329.99782 * 1 2 3 23 23 H 1.08006 * 119.81695 * 359.97438 * 3 2 1 24 24 H 1.07997 * 120.05464 * 180.02562 * 4 3 2 25 25 H 1.08008 * 120.02692 * 180.30490 * 7 6 5 26 26 H 1.09001 * 110.25132 * 240.73028 * 8 6 5 27 27 H 1.09002 * 110.25372 * 118.72172 * 8 6 5 28 28 H 1.08005 * 125.86401 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.46670 * 335.02485 * 11 10 9 30 30 H 1.09000 * 109.47247 * 215.02198 * 11 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1989 0.0000 4 6 3.5767 1.2092 0.0005 5 6 4.2822 0.0031 0.0005 6 6 3.5737 -1.1999 -0.0046 7 6 2.1983 -1.1998 -0.0101 8 6 4.6069 -2.3001 0.0034 9 6 5.9441 -1.5968 0.0065 10 6 5.7267 -0.2933 0.0016 11 6 6.8119 0.7524 0.0021 12 6 7.0921 1.1860 -1.4138 13 1 6.5394 0.7485 -2.2320 14 6 8.0542 2.1413 -1.6645 15 7 8.7270 2.6744 -0.6681 16 14 8.4011 2.6794 -3.4194 17 1 7.5155 1.9342 -4.3498 18 1 8.1441 4.1361 -3.5505 19 1 9.8200 2.3951 -3.7529 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6538 2.1320 -0.0004 24 1 4.1106 2.1480 0.0009 25 1 1.6578 -2.1349 -0.0091 26 1 4.5074 -2.9176 -0.8893 27 1 4.5002 -2.9114 0.8996 28 1 6.9116 -2.0770 0.0125 29 1 7.7184 0.3349 0.4404 30 1 6.4876 1.6124 0.5880 31 1 9.4035 3.3467 -0.8445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260897024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 26.230308 kcal Electronic energy + Delta-G solvation = -13317.870298 eV Core-core repulsion = 11142.566400 eV Total energy + Delta-G solvation = -2175.303899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80875 -36.15999 -33.12627 -31.47294 -30.67534 -28.39296 -26.36275 -25.15764 -22.45043 -21.73173 -19.93603 -18.15127 -16.28493 -15.30437 -14.83481 -14.41464 -14.26807 -14.09331 -13.29956 -13.10481 -12.89564 -12.27969 -12.08413 -11.83670 -11.38744 -11.31049 -11.21631 -10.96127 -10.56078 -10.42532 -10.16881 -9.70969 -9.43542 -8.75154 -8.39729 -8.30587 -7.32088 -6.01788 -4.04697 1.47328 1.84750 3.19451 3.30412 3.38233 3.44204 4.37359 4.51211 4.82592 5.14792 5.29080 5.34725 5.37449 5.47114 5.60911 5.67860 5.87444 5.92887 5.95715 6.02676 6.15206 6.39366 6.48342 6.60949 6.86509 6.94304 7.11036 7.22386 7.43451 7.49996 7.68833 7.92750 7.95351 8.37596 9.00911 9.58889 11.08397 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.007881 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.077209 B = 3551.866128 C = 3952.196191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.128 4.128 4 C -0.085 4.085 5 C -0.052 4.052 6 C -0.108 4.108 7 C -0.109 4.109 8 C -0.055 4.055 9 C -0.204 4.204 10 C -0.045 4.045 11 C 0.056 3.944 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -6.359 1.794 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.052 4.052 6 C -0.108 4.108 7 C -0.127 4.127 8 C -0.091 4.091 9 C -0.222 4.222 10 C -0.045 4.045 11 C 0.020 3.980 12 C -0.545 4.545 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.145 0.855 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.154 0.846 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.290 -6.232 1.832 13.901 hybrid contribution 0.345 0.454 -1.013 1.162 sum -11.945 -5.778 0.819 13.294 Atomic orbital electron populations 1.20699 0.91598 1.02189 1.01820 1.19762 0.95450 0.93024 1.01841 1.20814 0.93898 0.97144 1.02715 1.21030 0.93361 0.98035 0.97915 1.19950 0.93965 0.92958 0.98350 1.20582 0.93451 0.96415 1.00388 1.20016 0.92174 0.97170 1.03319 1.19842 0.91324 0.96255 1.01634 1.23266 0.96860 0.94763 1.07303 1.21340 0.92182 0.96096 0.94874 1.18088 0.90677 0.91683 0.97580 1.21089 1.19657 1.21725 0.92034 0.92541 1.25005 0.95979 0.96268 0.97128 1.69968 1.24458 1.28363 1.30699 0.86512 0.78100 0.78426 0.84895 1.19699 1.20954 1.20939 0.91655 0.92018 0.91881 0.86436 0.85502 0.86813 0.89540 0.89623 0.84552 0.95276 0.95513 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.10 -1.50 5.89 -104.49 -0.62 -2.11 16 3 C -0.13 -2.07 9.67 -39.66 -0.38 -2.45 16 4 C -0.09 -1.66 10.08 -39.15 -0.39 -2.06 16 5 C -0.05 -1.09 6.17 -105.07 -0.65 -1.74 16 6 C -0.11 -1.95 6.38 -104.25 -0.66 -2.61 16 7 C -0.11 -1.69 9.69 -39.75 -0.39 -2.07 16 8 C -0.05 -0.89 6.76 -28.73 -0.19 -1.08 16 9 C -0.20 -3.99 10.91 -36.04 -0.39 -4.39 16 10 C -0.04 -1.02 5.33 -102.79 -0.55 -1.57 16 11 C 0.06 1.50 5.38 -29.03 -0.16 1.34 16 12 C -0.51 -14.51 9.09 -34.44 -0.31 -14.83 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 22 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 23 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 24 H 0.13 2.54 8.06 -52.49 -0.42 2.11 16 25 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.14 2.49 8.06 -52.48 -0.42 2.06 16 29 H 0.03 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -30.70 270.10 -8.83 -39.53 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.19 Total: -1.57 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -4.43 Total: -32.82 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.70 -8.83 -39.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260897024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.760 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds