Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38362 * 119.94593 * 2 1 4 4 C 1.37905 * 120.37402 * 179.97438 * 3 2 1 5 5 C 1.39726 * 119.89485 * 0.02562 * 4 3 2 6 6 C 1.39611 * 119.18255 * 0.21510 * 5 4 3 7 7 C 1.37542 * 120.49219 * 0.02562 * 6 5 4 8 8 C 1.50928 * 106.30369 * 180.26144 * 6 5 4 9 9 C 1.51090 * 105.46066 * 359.72656 * 8 6 5 10 10 C 1.32154 * 108.27108 * 0.02562 * 9 8 6 11 11 C 1.50699 * 124.46820 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46817 * 95.02261 * 11 10 9 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47361 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47264 * 120.00115 * 16 14 12 19 19 H 1.48500 * 109.46969 * 239.99720 * 16 14 12 20 20 H 1.08998 * 109.47121 * 90.00454 * 1 2 3 21 21 H 1.09006 * 109.46729 * 210.00430 * 1 2 3 22 22 H 1.08997 * 109.47120 * 329.99782 * 1 2 3 23 23 H 1.08006 * 119.81695 * 359.97438 * 3 2 1 24 24 H 1.07997 * 120.05464 * 180.02562 * 4 3 2 25 25 H 1.08008 * 120.02692 * 180.30490 * 7 6 5 26 26 H 1.09001 * 110.25132 * 240.73028 * 8 6 5 27 27 H 1.09002 * 110.25372 * 118.72172 * 8 6 5 28 28 H 1.08005 * 125.86401 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.46670 * 335.02485 * 11 10 9 30 30 H 1.09000 * 109.47247 * 215.02198 * 11 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1989 0.0000 4 6 3.5767 1.2092 0.0005 5 6 4.2822 0.0031 0.0005 6 6 3.5737 -1.1999 -0.0046 7 6 2.1983 -1.1998 -0.0101 8 6 4.6069 -2.3001 0.0034 9 6 5.9441 -1.5968 0.0065 10 6 5.7267 -0.2933 0.0016 11 6 6.8119 0.7524 0.0021 12 6 7.0921 1.1860 -1.4138 13 1 6.5394 0.7485 -2.2320 14 6 8.0542 2.1413 -1.6645 15 7 8.7270 2.6744 -0.6681 16 14 8.4011 2.6794 -3.4194 17 1 7.5155 1.9342 -4.3498 18 1 8.1441 4.1361 -3.5505 19 1 9.8200 2.3951 -3.7529 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6538 2.1320 -0.0004 24 1 4.1106 2.1480 0.0009 25 1 1.6578 -2.1349 -0.0091 26 1 4.5074 -2.9176 -0.8893 27 1 4.5002 -2.9114 0.8996 28 1 6.9116 -2.0770 0.0125 29 1 7.7184 0.3349 0.4404 30 1 6.4876 1.6124 0.5880 31 1 9.4035 3.3467 -0.8445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260897024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 10.207437 kcal Electronic energy + Delta-G solvation = -13318.565102 eV Core-core repulsion = 11142.566400 eV Total energy + Delta-G solvation = -2175.998702 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17764 -37.54413 -35.23071 -32.82481 -32.24131 -30.00047 -27.76561 -26.70172 -24.39669 -23.08788 -21.18918 -19.68679 -18.54073 -16.94952 -16.30675 -15.99361 -15.68748 -15.38969 -14.56310 -14.45559 -14.27869 -14.15087 -13.63811 -13.26348 -12.93152 -12.80646 -12.58467 -12.50643 -12.43359 -12.07945 -11.69276 -11.65760 -11.33856 -10.64140 -10.35478 -9.61239 -8.79124 -8.22983 -6.36669 0.10969 0.53233 1.34936 1.35764 1.49305 1.70991 2.38079 3.01823 3.06658 3.57936 3.83854 4.06571 4.11261 4.25008 4.47375 4.63260 4.70902 4.80598 4.83291 4.91022 4.93570 5.00647 5.18898 5.21898 5.27906 5.35663 5.51679 5.69659 5.70957 5.82056 5.88879 6.08098 6.18795 6.24455 6.75810 7.31821 8.86540 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.007881 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.077209 B = 3551.866128 C = 3952.196191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.047 4.047 9 C -0.187 4.187 10 C -0.093 4.093 11 C 0.067 3.933 12 C -0.525 4.525 13 H 0.049 0.951 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.272 1.272 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.140 0.860 24 H 0.098 0.902 25 H 0.153 0.847 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.143 0.857 29 H 0.003 0.997 30 H -0.007 1.007 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -8.155 0.746 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.082 4.082 9 C -0.204 4.204 10 C -0.093 4.093 11 C 0.030 3.970 12 C -0.562 4.562 13 H 0.067 0.933 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.197 1.197 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.158 0.842 24 H 0.116 0.884 25 H 0.171 0.829 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.021 0.979 30 H 0.012 0.988 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.816 -8.035 0.791 16.874 hybrid contribution 1.089 0.999 -0.627 1.605 sum -13.728 -7.037 0.165 15.427 Atomic orbital electron populations 1.20788 0.88092 1.03934 1.03215 1.20302 0.97855 0.92040 0.99041 1.21089 0.92442 0.99263 1.01958 1.21041 0.95109 0.96844 1.00499 1.20015 0.93205 0.94844 1.01338 1.20874 0.94747 0.95368 1.00296 1.20480 0.91195 0.99063 1.01563 1.19898 0.88251 0.95889 1.04202 1.23676 0.99227 0.94029 1.03509 1.21187 0.92649 0.96319 0.99155 1.17781 0.91211 0.91875 0.96107 1.21345 1.19888 1.22244 0.92763 0.93261 1.25945 0.95538 0.96080 1.01881 1.70090 1.25007 1.28900 1.33159 0.85386 0.78325 0.78176 0.79124 1.19123 1.20040 1.19722 0.90213 0.89878 0.90679 0.84189 0.88403 0.82894 0.86884 0.86295 0.83891 0.97852 0.98849 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 10.01 71.24 0.71 -1.04 16 2 C -0.09 -2.45 5.89 -19.78 -0.12 -2.56 16 3 C -0.13 -4.11 9.67 22.22 0.21 -3.89 16 4 C -0.12 -4.79 10.08 22.55 0.23 -4.56 16 5 C -0.09 -4.04 6.17 -20.15 -0.12 -4.17 16 6 C -0.11 -3.85 6.38 -19.63 -0.13 -3.97 16 7 C -0.11 -2.88 9.69 22.16 0.21 -2.66 16 8 C -0.05 -1.40 6.76 29.30 0.20 -1.21 16 9 C -0.19 -7.31 10.91 24.81 0.27 -7.04 16 10 C -0.09 -4.43 5.33 -18.43 -0.10 -4.53 16 11 C 0.07 3.85 5.38 29.10 0.16 4.01 16 12 C -0.52 -31.62 9.09 25.60 0.23 -31.38 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 16 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 22 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 23 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 24 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 25 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 26 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 29 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.58 270.10 5.64 -64.94 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.10 Total: 7.28 kcal Atomic # 6 Polarization: -64.57 SS G_CDS: 2.23 Total: -62.35 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.28 Total: -57.73 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.58 5.64 -64.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260897024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.152 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds