Wall clock time and date at job start Mon Mar 30 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38506 * 120.02137 * 2 1 4 4 C 1.38318 * 120.10963 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.37108 * 0.02562 * 4 3 2 6 6 C 1.39685 * 119.89722 * 359.97438 * 5 4 3 7 7 C 1.37502 * 120.02568 * 180.02562 * 2 1 3 8 8 C 1.50935 * 133.21402 * 359.97438 * 7 2 1 9 9 C 1.51091 * 105.45942 * 180.02562 * 8 7 2 10 10 C 1.50700 * 125.85795 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47318 * 275.00015 * 10 9 8 12 12 H 1.08008 * 119.99721 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00535 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99712 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00544 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46444 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47216 * 119.99851 * 15 13 11 18 18 H 1.48494 * 109.47065 * 240.00240 * 15 13 11 19 19 C 1.32154 * 108.28056 * 359.75149 * 9 8 7 20 20 H 1.08999 * 109.47229 * 90.00197 * 1 2 3 21 21 H 1.09005 * 109.46667 * 209.99906 * 1 2 3 22 22 H 1.08994 * 109.46976 * 329.99649 * 1 2 3 23 23 H 1.08007 * 119.94448 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.81624 * 180.02562 * 4 3 2 25 25 H 1.08003 * 120.05498 * 179.97438 * 5 4 3 26 26 H 1.09002 * 110.24630 * 299.00084 * 8 7 2 27 27 H 1.09003 * 110.24480 * 60.91726 * 8 7 2 28 28 H 1.09002 * 109.47088 * 34.99547 * 10 9 8 29 29 H 1.09000 * 109.47073 * 154.99720 * 10 9 8 30 30 H 0.96999 * 119.99846 * 180.02562 * 14 13 11 31 31 H 1.07996 * 124.46225 * 180.28563 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2000 1.1992 0.0000 4 6 3.5832 1.2014 -0.0005 5 6 4.2825 0.0123 -0.0016 6 6 3.5916 -1.2018 -0.0016 7 6 2.1951 -1.1905 -0.0005 8 6 1.7599 -2.6357 -0.0007 9 6 3.0381 -3.4413 -0.0007 10 6 3.1337 -4.9453 -0.0014 11 6 3.0416 -5.4551 1.4137 12 1 2.9259 -4.7596 2.2318 13 6 3.1062 -6.8094 1.6642 14 7 3.2487 -7.6562 0.6681 15 14 2.9927 -7.4414 3.4184 16 1 2.8385 -6.2942 4.3487 17 1 1.8197 -8.3431 3.5448 18 1 4.2305 -8.1890 3.7562 19 6 4.0578 -2.6007 -0.0060 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6594 2.1343 0.0004 24 1 4.1188 2.1392 -0.0001 25 1 5.3625 0.0199 -0.0024 26 1 1.1767 -2.8541 0.8939 27 1 1.1748 -2.8533 -0.8943 28 1 2.3168 -5.3610 -0.5912 29 1 4.0864 -5.2485 -0.4356 30 1 3.2937 -8.6090 0.8442 31 1 5.0957 -2.8991 -0.0118 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260914481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:49 Heat of formation + Delta-G solvation = 10.103903 kcal Electronic energy + Delta-G solvation = -13213.306675 eV Core-core repulsion = 11037.303483 eV Total energy + Delta-G solvation = -2176.003192 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22834 -37.46477 -35.06117 -33.77846 -31.73081 -28.82740 -28.47566 -27.10736 -25.15128 -22.03404 -21.53549 -19.46240 -18.53901 -17.07513 -16.55898 -16.03723 -15.76767 -15.57571 -14.51608 -14.36960 -14.18962 -13.93419 -13.57829 -13.38968 -13.01758 -12.83517 -12.73065 -12.55314 -12.20169 -11.99830 -11.69823 -11.64919 -11.51707 -10.63008 -10.61132 -9.46475 -8.84675 -8.21779 -6.37047 0.11699 0.51590 1.38477 1.38951 1.52255 1.67366 2.39510 3.01298 3.07440 3.54251 3.79338 4.05514 4.09164 4.15811 4.46432 4.64450 4.65071 4.71234 4.81620 4.87448 4.89331 4.97371 5.15619 5.18770 5.26884 5.33050 5.61267 5.64906 5.70100 5.76825 5.83343 6.04727 6.16699 6.21597 6.75181 7.31946 8.86423 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043739 B = 0.006678 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.006869 B = 4192.144668 C = 4366.170976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.129 4.129 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.053 4.053 9 C -0.083 4.083 10 C 0.069 3.931 11 C -0.531 4.531 12 H 0.054 0.946 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.182 4.182 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.155 0.845 24 H 0.154 0.846 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.012 0.988 29 H 0.006 0.994 30 H 0.267 0.733 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 16.669 -0.804 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.147 4.147 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.089 4.089 9 C -0.083 4.083 10 C 0.032 3.968 11 C -0.569 4.569 12 H 0.073 0.927 13 C -0.193 4.193 14 N -0.569 5.569 15 Si 0.791 3.209 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.202 1.202 19 C -0.200 4.200 20 H 0.098 0.902 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.173 0.827 24 H 0.171 0.829 25 H 0.148 0.852 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.510 16.496 -0.847 16.887 hybrid contribution 0.397 -1.071 0.617 1.298 sum -3.114 15.425 -0.231 15.738 Atomic orbital electron populations 1.20810 0.89454 1.03449 1.03107 1.19490 0.97317 0.91052 0.99645 1.21364 0.94374 0.97546 1.01429 1.21296 0.94601 0.97889 0.99504 1.21087 1.00389 0.91054 1.02122 1.19976 0.94514 0.93203 0.99987 1.20494 0.94574 0.94780 1.02837 1.19825 0.96549 0.89580 1.02956 1.22910 0.95454 0.96065 0.93902 1.17776 0.96089 0.86353 0.96572 1.21367 1.50623 0.92182 0.92733 0.92745 1.25925 0.94444 0.97023 1.01868 1.70081 1.50640 1.02995 1.33184 0.85364 0.78097 0.78354 0.79054 1.19044 1.19818 1.20163 1.21634 0.98669 0.91385 1.08278 0.90198 0.92150 0.89465 0.82741 0.82860 0.85243 0.88715 0.88028 0.96990 0.97619 0.92425 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.93 71.24 0.71 -1.62 16 2 C -0.08 -2.07 5.87 -19.97 -0.12 -2.18 16 3 C -0.13 -2.99 9.71 22.35 0.22 -2.77 16 4 C -0.12 -2.73 10.02 22.22 0.22 -2.51 16 5 C -0.13 -3.84 10.10 22.55 0.23 -3.61 16 6 C -0.08 -2.84 6.23 -20.16 -0.13 -2.97 16 7 C -0.13 -4.43 6.14 -19.62 -0.12 -4.55 16 8 C -0.05 -2.05 6.34 29.30 0.19 -1.86 16 9 C -0.08 -3.82 5.54 -17.32 -0.10 -3.92 16 10 C 0.07 3.76 5.48 29.10 0.16 3.92 16 11 C -0.53 -30.76 9.09 25.60 0.23 -30.52 16 12 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 15 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 C -0.18 -7.76 10.63 23.70 0.25 -7.50 16 20 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.06 1.34 7.83 -2.38 -0.02 1.33 16 22 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 23 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 24 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 25 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 27 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -65.70 269.60 5.62 -60.08 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.10 Total: 8.57 kcal Atomic # 6 Polarization: -61.52 SS G_CDS: 2.21 Total: -59.31 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.28 Total: -55.82 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.70 5.62 -60.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.182 kcal (2) G-P(sol) polarization free energy of solvation -65.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds