Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38370 * 119.81431 * 2 1 4 4 C 1.38468 * 120.11068 * 179.97438 * 3 2 1 5 5 C 1.37549 * 119.94901 * 0.02562 * 4 3 2 6 6 C 1.39622 * 120.48803 * 0.02562 * 5 4 3 7 7 C 1.37911 * 119.81513 * 180.02562 * 2 1 3 8 8 C 1.47457 * 108.89713 * 180.02562 * 6 5 4 9 9 C 1.32154 * 111.06766 * 359.97438 * 8 6 5 10 10 C 1.50711 * 125.86452 * 179.73768 * 9 8 6 11 11 C 1.50696 * 109.46943 * 95.02397 * 10 9 8 12 12 H 1.07998 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99317 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99407 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00536 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46993 * 89.99720 * 15 13 11 17 17 H 1.48493 * 109.47408 * 209.99968 * 15 13 11 18 18 H 1.48499 * 109.47196 * 329.99958 * 15 13 11 19 19 C 1.50932 * 133.20766 * 180.02562 * 5 4 3 20 20 H 1.08999 * 109.46817 * 90.00325 * 1 2 3 21 21 H 1.09001 * 109.46691 * 209.99745 * 1 2 3 22 22 H 1.09000 * 109.46991 * 329.99962 * 1 2 3 23 23 H 1.07996 * 119.94623 * 359.97438 * 3 2 1 24 24 H 1.07993 * 120.02328 * 180.02562 * 4 3 2 25 25 H 1.07995 * 120.05046 * 0.02562 * 7 2 1 26 26 H 1.07997 * 124.46733 * 180.02562 * 8 6 5 27 27 H 1.08998 * 109.46646 * 215.03018 * 10 9 8 28 28 H 1.09003 * 109.46776 * 335.02089 * 10 9 8 29 29 H 0.97008 * 119.99711 * 179.97438 * 14 13 11 30 30 H 1.09000 * 110.25111 * 61.00448 * 19 5 4 31 31 H 1.08998 * 110.24836 * 298.99372 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2006 0.0000 4 6 3.5797 1.2077 0.0005 5 6 4.2725 0.0195 0.0005 6 6 3.5899 -1.1985 -0.0005 7 6 2.1927 -1.1966 -0.0005 8 6 4.5735 -2.2972 0.0003 9 6 5.8091 -1.8286 0.0013 10 6 7.0678 -2.6575 0.0080 11 6 7.5592 -2.8359 -1.4053 12 1 7.0149 -2.3931 -2.2263 13 6 8.7044 -3.5637 -1.6502 14 7 9.1335 -3.7191 -2.8836 15 14 9.6463 -4.3290 -0.2302 16 1 9.1295 -5.6974 0.0263 17 1 11.0889 -4.4013 -0.5748 18 1 9.4693 -3.4969 0.9869 19 6 5.7434 -0.3191 0.0015 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6511 2.1336 -0.0004 24 1 4.1152 2.1455 0.0010 25 1 1.6506 -2.1306 -0.0014 26 1 4.3178 -3.3464 -0.0006 27 1 7.8326 -2.1519 0.5976 28 1 6.8578 -3.6334 0.4458 29 1 9.9394 -4.2308 -3.0559 30 1 6.2215 0.0790 0.8965 31 1 6.2229 0.0797 -0.8924 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 28.703731 kcal Electronic energy + Delta-G solvation = -13096.313399 eV Core-core repulsion = 10921.116756 eV Total energy + Delta-G solvation = -2175.196643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.90795 -36.40088 -33.10279 -31.81702 -30.55075 -28.76289 -26.94565 -25.07083 -22.96741 -21.20566 -20.12007 -17.82639 -16.82346 -15.72907 -15.02194 -14.64830 -14.29744 -13.99244 -13.36817 -13.25873 -13.06980 -12.47480 -12.16683 -12.06246 -11.80259 -11.37350 -11.05355 -11.00890 -10.52984 -10.34425 -10.26772 -10.07912 -9.52750 -9.23238 -8.61630 -8.27348 -7.39908 -6.10894 -4.10769 1.39551 1.65967 3.07091 3.26698 3.34552 3.36640 4.23414 4.38306 4.77424 5.02019 5.07314 5.20223 5.26005 5.36139 5.59566 5.61040 5.73302 5.81278 5.87072 6.01518 6.16727 6.28547 6.35113 6.42584 6.67627 6.76826 6.89485 6.91371 7.04953 7.29907 7.34993 7.56726 7.70281 8.45468 8.93676 9.48702 11.01951 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.061061 B = 0.006077 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.444926 B = 4606.612935 C = 4687.122208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.041 4.041 7 C -0.116 4.116 8 C -0.184 4.184 9 C -0.042 4.042 10 C 0.027 3.973 11 C -0.516 4.516 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.879 3.121 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.264 1.264 19 C -0.064 4.064 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.265 0.735 30 H 0.094 0.906 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 7.482 7.352 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.041 4.041 7 C -0.134 4.134 8 C -0.202 4.202 9 C -0.042 4.042 10 C -0.010 4.010 11 C -0.554 4.554 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.100 4.100 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.141 0.859 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.147 7.406 7.239 15.963 hybrid contribution 0.535 -0.511 0.486 0.885 sum -11.612 6.895 7.726 15.559 Atomic orbital electron populations 1.20737 0.91585 1.02283 1.01979 1.19649 0.95589 0.93015 1.00974 1.20839 0.93689 0.97087 1.03884 1.20224 0.93666 0.96582 1.00909 1.20576 0.96382 0.93483 1.01154 1.19916 0.92882 0.94292 0.97023 1.20664 0.92663 0.97288 1.02776 1.21438 0.91833 0.97080 1.09824 1.22748 0.96056 0.94138 0.91257 1.18517 0.89898 0.93862 0.98724 1.20893 1.09812 1.33850 0.90803 0.90764 1.24992 0.96922 0.95697 0.95573 1.69903 1.23740 1.40916 1.19141 0.86793 0.79280 0.80175 0.83208 1.20109 1.21180 1.18896 1.19983 0.92036 0.94865 1.03094 0.91520 0.91843 0.91907 0.86448 0.86458 0.86572 0.85899 0.95077 0.95389 0.92526 0.88809 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.00 36.01 0.36 -0.75 16 2 C -0.09 -1.27 5.87 -104.69 -0.61 -1.89 16 3 C -0.14 -1.86 9.70 -39.45 -0.38 -2.24 16 4 C -0.10 -1.42 10.03 -39.75 -0.40 -1.82 16 5 C -0.12 -2.03 6.38 -104.24 -0.66 -2.69 16 6 C -0.04 -0.75 6.23 -105.07 -0.65 -1.40 16 7 C -0.12 -1.83 9.74 -39.15 -0.38 -2.21 16 8 C -0.18 -3.66 10.63 -37.75 -0.40 -4.06 16 9 C -0.04 -0.88 5.54 -101.08 -0.56 -1.44 16 10 C 0.03 0.64 4.55 -29.03 -0.13 0.51 16 11 C -0.52 -14.54 9.65 -34.44 -0.33 -14.87 16 12 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 15 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 19 C -0.06 -1.17 6.74 -28.73 -0.19 -1.36 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 22 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 23 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 24 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 28 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 266.59 15.07 4.02 4.02 Total: -1.00 -30.45 266.59 -8.48 -38.93 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.15 Total: -0.48 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -4.45 Total: -32.32 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.45 -8.48 -38.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.634 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds