Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 C 1.38369 * 119.81128 * 299.72240 * 12 2 1 14 14 C 1.38473 * 120.10863 * 179.76990 * 13 12 2 15 15 C 1.37545 * 119.94701 * 0.50224 * 14 13 12 16 16 C 1.39617 * 120.49279 * 359.75354 * 15 14 13 17 17 C 1.37902 * 119.82063 * 119.99703 * 12 2 1 18 18 C 1.47461 * 108.89865 * 179.97438 * 16 15 14 19 19 C 1.32147 * 111.06962 * 359.97438 * 18 16 15 20 20 C 1.50935 * 133.20672 * 179.74833 * 15 14 13 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 25 25 H 1.08007 * 119.95018 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.02576 * 180.23631 * 14 13 12 27 27 H 1.08006 * 120.04975 * 359.97438 * 17 12 2 28 28 H 1.08001 * 124.46097 * 179.97438 * 18 16 15 29 29 H 1.08001 * 125.86589 * 180.02562 * 19 18 16 30 30 H 1.09006 * 110.24792 * 299.00180 * 20 15 14 31 31 H 1.08994 * 110.24733 * 61.00449 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 6 1.7005 -2.0367 -1.4428 14 6 2.1548 -2.6939 -2.5738 15 6 2.9458 -2.0302 -3.4825 16 6 3.2921 -0.6934 -3.2770 17 6 2.8249 -0.0364 -2.1358 18 6 4.1384 -0.2416 -4.3969 19 6 4.3305 -1.2149 -5.2699 20 6 3.5960 -2.4415 -4.7810 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7095 1.1617 3.4844 25 1 1.0834 -2.5594 -0.7270 26 1 1.8918 -3.7281 -2.7401 27 1 3.0842 0.9977 -1.9629 28 1 4.5473 0.7535 -4.4911 29 1 4.9120 -1.1454 -6.1773 30 1 4.2983 -3.2573 -4.6094 31 1 2.8377 -2.7414 -5.5042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 19.547292 kcal Electronic energy + Delta-G solvation = -13447.538482 eV Core-core repulsion = 11271.944786 eV Total energy + Delta-G solvation = -2175.593696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07792 -37.85540 -35.34629 -32.94523 -31.66071 -29.05416 -27.77609 -27.21052 -23.42236 -23.31440 -21.06899 -19.90416 -18.28679 -17.07134 -16.67278 -16.16073 -15.71886 -15.27344 -14.78651 -14.29958 -13.99030 -13.78711 -13.42671 -13.15570 -12.83177 -12.67078 -12.49343 -12.39197 -12.20769 -12.07225 -11.69904 -11.20041 -11.05274 -10.87956 -10.49009 -9.31440 -8.92057 -8.11370 -6.26142 0.15306 0.64780 1.40336 1.41830 1.49789 1.69857 2.41690 3.09406 3.17185 3.63942 3.80179 4.12148 4.22941 4.35491 4.61498 4.70225 4.78637 4.81749 4.85287 4.91474 5.03726 5.12862 5.24224 5.32452 5.44423 5.50755 5.63583 5.68943 5.73832 6.02062 6.05007 6.09769 6.26079 6.36434 6.81899 7.41634 8.93119 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047565 B = 0.007297 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.524648 B = 3836.498688 C = 3928.471757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.071 3.929 3 H -0.001 1.001 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.268 1.268 12 C -0.060 4.060 13 C -0.124 4.124 14 C -0.103 4.103 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.133 4.133 18 C -0.152 4.152 19 C -0.133 4.133 20 C -0.061 4.061 21 H 0.034 0.966 22 H 0.060 0.940 23 H 0.022 0.978 24 H 0.263 0.737 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.180 0.820 30 H 0.116 0.884 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -6.219 -13.817 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 H 0.018 0.982 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.193 1.193 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.120 4.120 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.151 4.151 18 C -0.170 4.170 19 C -0.150 4.150 20 C -0.096 4.096 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.197 0.803 30 H 0.133 0.867 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.550 -6.106 -13.673 15.650 hybrid contribution 0.044 0.246 1.462 1.483 sum 4.594 -5.859 -12.211 14.302 Atomic orbital electron populations 1.21614 0.97255 0.99309 0.99572 1.17745 0.93277 0.93740 0.89978 0.98243 1.21346 1.31257 1.12374 0.91165 0.93153 1.25748 0.95206 0.95719 1.01846 1.70008 1.37526 1.24015 1.24165 0.85635 0.78645 0.78929 0.78620 1.19983 1.20605 1.19342 1.20273 0.95442 0.94981 0.95261 1.21081 1.01207 0.94205 0.97699 1.20513 0.97902 1.00451 0.93159 1.20825 0.99649 0.94818 0.98426 1.20186 0.98946 0.95434 0.95122 1.20881 0.99935 0.99646 0.94664 1.22002 1.00070 1.00855 0.94031 1.24095 0.98188 0.93560 0.99162 1.20062 0.99139 0.98303 0.92121 0.94739 0.92090 0.95938 0.92816 0.86621 0.83702 0.87677 0.84731 0.80274 0.86673 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.78 71.98 0.63 -5.48 16 2 C 0.07 3.81 2.47 -12.29 -0.03 3.78 16 3 H 0.00 -0.03 7.86 -2.39 -0.02 -0.05 16 4 C -0.52 -29.92 8.23 25.60 0.21 -29.71 16 5 H 0.05 2.87 7.59 -2.91 -0.02 2.84 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -54.04 11.32 21.44 0.24 -53.80 16 8 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 C -0.06 -2.78 4.73 -19.91 -0.09 -2.87 16 13 C -0.12 -5.15 8.69 22.36 0.19 -4.96 16 14 C -0.10 -3.45 10.03 22.16 0.22 -3.23 16 15 C -0.14 -4.36 6.38 -19.62 -0.13 -4.48 16 16 C -0.10 -3.47 6.23 -20.16 -0.13 -3.59 16 17 C -0.13 -5.70 9.72 22.55 0.22 -5.48 16 18 C -0.15 -4.11 10.75 23.71 0.25 -3.86 16 19 C -0.13 -2.64 11.08 24.82 0.28 -2.37 16 20 C -0.06 -1.28 6.76 29.30 0.20 -1.08 16 21 H 0.03 1.66 7.39 -2.39 -0.02 1.64 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 24 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 25 H 0.12 4.87 7.57 -2.91 -0.02 4.85 16 26 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.11 4.46 7.93 -2.91 -0.02 4.44 16 28 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.30 262.65 5.65 -59.64 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.10 Total: 9.81 kcal Atomic # 6 Polarization: -64.41 SS G_CDS: 2.28 Total: -62.13 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.24 Total: -53.80 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.30 5.65 -59.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.190 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds