Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 C 1.38375 * 119.81012 * 59.99947 * 12 2 1 14 14 C 1.38470 * 120.10026 * 179.97438 * 13 12 2 15 15 C 1.37539 * 119.95327 * 0.02562 * 14 13 12 16 16 C 1.39619 * 120.49393 * 0.02562 * 15 14 13 17 17 C 1.37907 * 119.81588 * 239.72597 * 12 2 1 18 18 C 1.47458 * 108.89707 * 179.97438 * 16 15 14 19 19 C 1.32153 * 111.07269 * 359.97438 * 18 16 15 20 20 C 1.50937 * 133.20309 * 179.97438 * 15 14 13 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.94724 * 0.02562 * 13 12 2 26 26 H 1.07998 * 120.01960 * 180.02562 * 14 13 12 27 27 H 1.07998 * 120.04591 * 0.02562 * 17 12 2 28 28 H 1.08005 * 124.46498 * 180.02562 * 18 16 15 29 29 H 1.07994 * 125.87087 * 179.97438 * 19 18 16 30 30 H 1.08999 * 110.24835 * 299.00128 * 20 15 14 31 31 H 1.08997 * 110.24681 * 61.00951 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 6 1.6956 -2.0352 1.4455 14 6 2.1544 -2.6940 2.5738 15 6 2.9454 -2.0304 3.4824 16 6 3.2912 -0.6933 3.2773 17 6 2.8296 -0.0382 2.1329 18 6 4.1367 -0.2414 4.3978 19 6 4.3279 -1.2145 5.2713 20 6 3.5953 -2.4417 4.7812 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7092 1.1618 -3.4843 25 1 1.0749 -2.5564 0.7319 26 1 1.8911 -3.7281 2.7402 27 1 3.0924 0.9946 1.9577 28 1 4.5451 0.7539 4.4925 29 1 4.9087 -1.1448 6.1791 30 1 2.8368 -2.7414 5.5043 31 1 4.2974 -3.2576 4.6098 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975345.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = 19.419416 kcal Electronic energy + Delta-G solvation = -13447.783365 eV Core-core repulsion = 11272.184124 eV Total energy + Delta-G solvation = -2175.599241 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07778 -37.85577 -35.34761 -32.94612 -31.66238 -29.05337 -27.77669 -27.21508 -23.42328 -23.31546 -21.06948 -19.90454 -18.29398 -17.07435 -16.67065 -16.16283 -15.71516 -15.27434 -14.79353 -14.30109 -13.99567 -13.78737 -13.42178 -13.16229 -12.86560 -12.66041 -12.46608 -12.39215 -12.21479 -12.06815 -11.69805 -11.20501 -11.03945 -10.87737 -10.49895 -9.31427 -8.92041 -8.11884 -6.26429 0.15307 0.64819 1.38858 1.40417 1.52439 1.69869 2.41475 3.09321 3.16909 3.63942 3.80195 4.12152 4.22972 4.35477 4.61532 4.70195 4.78636 4.81709 4.85280 4.91469 5.03729 5.12827 5.24290 5.32440 5.44415 5.50919 5.63554 5.69035 5.73838 6.02034 6.05031 6.09746 6.26068 6.36306 6.82102 7.41469 8.93005 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047575 B = 0.007296 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.408512 B = 3836.977382 C = 3928.466274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.070 3.930 3 H 0.000 1.000 4 C -0.521 4.521 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.280 1.280 12 C -0.060 4.060 13 C -0.124 4.124 14 C -0.103 4.103 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.133 4.133 18 C -0.152 4.152 19 C -0.133 4.133 20 C -0.061 4.061 21 H 0.022 0.978 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.262 0.738 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.180 0.820 30 H 0.118 0.882 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -6.206 13.833 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 H 0.018 0.982 4 C -0.559 4.559 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.206 1.206 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.120 4.120 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.150 4.150 20 C -0.096 4.096 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.197 0.803 30 H 0.136 0.864 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.562 -6.098 13.694 15.669 hybrid contribution 0.030 0.258 -1.472 1.494 sum 4.592 -5.840 12.222 14.303 Atomic orbital electron populations 1.21610 0.97242 0.99325 0.99571 1.17756 0.93293 0.93759 0.90002 0.98216 1.21401 1.31078 1.12275 0.91141 0.93174 1.25756 0.95230 0.95729 1.01871 1.70023 1.37637 1.24067 1.24041 0.85516 0.78278 0.78652 0.79310 1.19366 1.20144 1.20557 1.20277 0.95403 0.95003 0.95280 1.21081 1.01185 0.94208 0.97724 1.20510 0.97876 1.00441 0.93206 1.20825 0.99674 0.94803 0.98429 1.20185 0.98980 0.95439 0.95083 1.20880 0.99929 0.99679 0.94628 1.22004 1.00071 1.00862 0.94013 1.24096 0.98190 0.93561 0.99162 1.20063 0.99162 0.98298 0.92106 0.95933 0.92103 0.94717 0.92832 0.86603 0.83708 0.87665 0.84723 0.80274 0.86440 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.78 71.98 0.63 -5.48 16 2 C 0.07 3.77 2.47 -12.29 -0.03 3.74 16 3 H 0.00 -0.02 7.86 -2.39 -0.02 -0.04 16 4 C -0.52 -29.77 8.23 25.60 0.21 -29.56 16 5 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 8 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 C -0.06 -2.78 4.73 -19.91 -0.09 -2.88 16 13 C -0.12 -5.15 8.70 22.36 0.19 -4.96 16 14 C -0.10 -3.46 10.03 22.16 0.22 -3.24 16 15 C -0.14 -4.36 6.38 -19.62 -0.13 -4.49 16 16 C -0.10 -3.46 6.23 -20.16 -0.13 -3.59 16 17 C -0.13 -5.69 9.72 22.55 0.22 -5.47 16 18 C -0.15 -4.11 10.75 23.70 0.25 -3.86 16 19 C -0.13 -2.64 11.08 24.81 0.28 -2.37 16 20 C -0.06 -1.28 6.76 29.30 0.20 -1.08 16 21 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 23 H 0.03 1.66 7.37 -2.39 -0.02 1.65 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.12 4.87 7.56 -2.91 -0.02 4.85 16 26 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 27 H 0.11 4.46 7.93 -2.91 -0.02 4.44 16 28 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.40 262.64 5.65 -59.74 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.10 Total: 9.60 kcal Atomic # 6 Polarization: -64.35 SS G_CDS: 2.28 Total: -62.07 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.24 Total: -53.80 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.40 5.65 -59.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975345.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.163 kcal (2) G-P(sol) polarization free energy of solvation -65.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds