Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.94544 * 2 1 4 4 C 1.37902 * 120.36970 * 179.72350 * 3 2 1 5 5 C 1.39716 * 119.90230 * 0.02562 * 4 3 2 6 6 C 1.39620 * 119.18081 * 359.97438 * 5 4 3 7 7 C 1.37542 * 120.49020 * 0.02562 * 6 5 4 8 8 C 1.50936 * 106.30416 * 180.02562 * 6 5 4 9 9 C 1.51088 * 105.45851 * 359.97438 * 8 6 5 10 10 C 1.50704 * 125.86411 * 179.97438 * 9 8 6 11 11 C 1.50708 * 109.47081 * 275.00231 * 10 9 8 12 12 H 1.07994 * 119.99861 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99981 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47036 * 60.00364 * 15 13 11 17 17 H 1.48502 * 109.47305 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47133 * 300.00474 * 15 13 11 19 19 C 1.32153 * 108.27490 * 0.02562 * 9 8 6 20 20 H 1.09001 * 109.47117 * 90.00104 * 1 2 3 21 21 H 1.08998 * 109.46948 * 209.99469 * 1 2 3 22 22 H 1.08993 * 109.47388 * 329.99912 * 1 2 3 23 23 H 1.08002 * 119.80852 * 359.74358 * 3 2 1 24 24 H 1.08005 * 120.04762 * 180.02562 * 4 3 2 25 25 H 1.08004 * 120.02913 * 180.02562 * 7 6 5 26 26 H 1.08995 * 110.24818 * 118.99802 * 8 6 5 27 27 H 1.09000 * 110.24814 * 240.91643 * 8 6 5 28 28 H 1.09003 * 109.47182 * 35.00250 * 10 9 8 29 29 H 1.08997 * 109.47404 * 155.00282 * 10 9 8 30 30 H 0.97003 * 120.00021 * 179.97438 * 14 13 11 31 31 H 1.07993 * 124.47038 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1990 0.0000 4 6 3.5767 1.2092 0.0057 5 6 4.2822 0.0033 0.0111 6 6 3.5737 -1.1998 0.0110 7 6 2.1983 -1.1998 0.0053 8 6 4.6070 -2.3000 0.0180 9 6 5.9441 -1.5967 0.0212 10 6 7.2941 -2.2665 0.0288 11 6 7.6833 -2.5964 1.4469 12 1 7.0197 -2.3456 2.2611 13 6 8.8865 -3.2183 1.7046 14 7 9.6948 -3.5232 0.7130 15 14 9.3685 -3.6278 3.4622 16 1 8.3584 -4.5425 4.0522 17 1 10.6988 -4.2878 3.4697 18 1 9.4319 -2.3782 4.2621 19 6 5.7267 -0.2931 0.0174 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5138 23 1 1.6537 2.1320 -0.0042 24 1 4.1106 2.1481 0.0061 25 1 1.6577 -2.1348 0.0057 26 1 4.5001 -2.9122 0.9134 27 1 4.5066 -2.9175 -0.8747 28 1 7.2478 -3.1840 -0.5581 29 1 8.0353 -1.5951 -0.4046 30 1 10.5415 -3.9604 0.8944 31 1 6.5043 0.4562 0.0181 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = 24.422232 kcal Electronic energy + Delta-G solvation = -13073.462410 eV Core-core repulsion = 10898.080108 eV Total energy + Delta-G solvation = -2175.382303 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85503 -36.31799 -33.13749 -31.61757 -30.61058 -28.24080 -26.70028 -25.28259 -23.05584 -21.27585 -20.02769 -17.90738 -16.35560 -15.73862 -14.87834 -14.60176 -14.36157 -14.08879 -13.32427 -13.14647 -12.92716 -12.26507 -12.05560 -11.93810 -11.62883 -11.37058 -10.99560 -10.95437 -10.67390 -10.37175 -10.28580 -9.78901 -9.59284 -9.05667 -8.44931 -8.42282 -7.28465 -6.07006 -4.11772 1.41812 1.72472 3.12230 3.30688 3.34894 3.38912 4.27402 4.43324 4.77593 5.05702 5.22386 5.25885 5.28560 5.42501 5.54329 5.61372 5.80197 5.84491 5.91160 6.07362 6.19552 6.37247 6.40360 6.50619 6.74840 6.82838 7.08625 7.11591 7.33125 7.42014 7.58926 7.84054 7.88328 8.27919 8.92815 9.52317 11.02440 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054282 B = 0.005986 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.698190 B = 4676.622019 C = 4757.708906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.109 4.109 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.047 4.047 6 C -0.110 4.110 7 C -0.099 4.099 8 C -0.065 4.065 9 C -0.045 4.045 10 C 0.060 3.940 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.191 4.191 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 5.632 -1.801 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.047 4.047 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.101 4.101 9 C -0.045 4.045 10 C 0.023 3.977 11 C -0.553 4.553 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.209 4.209 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.856 5.545 -1.841 15.037 hybrid contribution 0.387 -0.130 0.978 1.059 sum -13.469 5.415 -0.864 14.542 Atomic orbital electron populations 1.20688 0.91565 1.02256 1.01770 1.19726 0.95495 0.92954 1.02736 1.20735 0.93798 0.97093 1.02399 1.20787 0.93629 0.96947 1.01933 1.19972 0.94300 0.93027 0.97384 1.20598 0.93452 0.96456 1.00485 1.20095 0.92284 0.97323 1.01977 1.20009 0.90547 0.96538 1.02980 1.23195 0.96514 0.94369 0.90434 1.18070 0.86115 0.95657 0.97813 1.20987 1.03456 1.39035 0.91775 0.92452 1.25002 0.96309 0.95581 0.97350 1.69945 1.10721 1.41520 1.31083 0.86571 0.77656 0.78698 0.84622 1.20136 1.21172 1.20136 1.21439 0.92154 0.96680 1.10626 0.91718 0.91912 0.91972 0.86616 0.86557 0.86606 0.88056 0.88775 0.95002 0.94849 0.92702 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.11 -1.50 5.89 -104.49 -0.62 -2.12 16 3 C -0.12 -1.71 9.67 -39.65 -0.38 -2.10 16 4 C -0.11 -1.83 10.10 -39.15 -0.40 -2.23 16 5 C -0.05 -0.87 6.23 -105.07 -0.65 -1.53 16 6 C -0.11 -1.96 6.38 -104.25 -0.66 -2.62 16 7 C -0.10 -1.50 9.68 -39.75 -0.38 -1.89 16 8 C -0.06 -1.22 6.74 -28.73 -0.19 -1.41 16 9 C -0.05 -0.98 5.54 -101.08 -0.56 -1.54 16 10 C 0.06 1.54 5.48 -29.03 -0.16 1.38 16 11 C -0.51 -14.33 9.09 -34.44 -0.31 -14.65 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.19 -3.92 10.63 -37.75 -0.40 -4.32 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 22 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 23 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 24 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 25 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 26 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 27 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 270.21 15.07 4.07 4.07 Total: -1.00 -29.57 270.21 -8.86 -38.43 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.19 Total: -1.25 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -4.46 Total: -32.17 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.57 -8.86 -38.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.854 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds