Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.94544 * 2 1 4 4 C 1.37902 * 120.36970 * 179.72350 * 3 2 1 5 5 C 1.39716 * 119.90230 * 0.02562 * 4 3 2 6 6 C 1.39620 * 119.18081 * 359.97438 * 5 4 3 7 7 C 1.37542 * 120.49020 * 0.02562 * 6 5 4 8 8 C 1.50936 * 106.30416 * 180.02562 * 6 5 4 9 9 C 1.51088 * 105.45851 * 359.97438 * 8 6 5 10 10 C 1.50704 * 125.86411 * 179.97438 * 9 8 6 11 11 C 1.50708 * 109.47081 * 275.00231 * 10 9 8 12 12 H 1.07994 * 119.99861 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99981 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47036 * 60.00364 * 15 13 11 17 17 H 1.48502 * 109.47305 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47133 * 300.00474 * 15 13 11 19 19 C 1.32153 * 108.27490 * 0.02562 * 9 8 6 20 20 H 1.09001 * 109.47117 * 90.00104 * 1 2 3 21 21 H 1.08998 * 109.46948 * 209.99469 * 1 2 3 22 22 H 1.08993 * 109.47388 * 329.99912 * 1 2 3 23 23 H 1.08002 * 119.80852 * 359.74358 * 3 2 1 24 24 H 1.08005 * 120.04762 * 180.02562 * 4 3 2 25 25 H 1.08004 * 120.02913 * 180.02562 * 7 6 5 26 26 H 1.08995 * 110.24818 * 118.99802 * 8 6 5 27 27 H 1.09000 * 110.24814 * 240.91643 * 8 6 5 28 28 H 1.09003 * 109.47182 * 35.00250 * 10 9 8 29 29 H 1.08997 * 109.47404 * 155.00282 * 10 9 8 30 30 H 0.97003 * 120.00021 * 179.97438 * 14 13 11 31 31 H 1.07993 * 124.47038 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1990 0.0000 4 6 3.5767 1.2092 0.0057 5 6 4.2822 0.0033 0.0111 6 6 3.5737 -1.1998 0.0110 7 6 2.1983 -1.1998 0.0053 8 6 4.6070 -2.3000 0.0180 9 6 5.9441 -1.5967 0.0212 10 6 7.2941 -2.2665 0.0288 11 6 7.6833 -2.5964 1.4469 12 1 7.0197 -2.3456 2.2611 13 6 8.8865 -3.2183 1.7046 14 7 9.6948 -3.5232 0.7130 15 14 9.3685 -3.6278 3.4622 16 1 8.3584 -4.5425 4.0522 17 1 10.6988 -4.2878 3.4697 18 1 9.4319 -2.3782 4.2621 19 6 5.7267 -0.2931 0.0174 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5138 23 1 1.6537 2.1320 -0.0042 24 1 4.1106 2.1481 0.0061 25 1 1.6577 -2.1348 0.0057 26 1 4.5001 -2.9122 0.9134 27 1 4.5066 -2.9175 -0.8747 28 1 7.2478 -3.1840 -0.5581 29 1 8.0353 -1.5951 -0.4046 30 1 10.5415 -3.9604 0.8944 31 1 6.5043 0.4562 0.0181 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = 9.965181 kcal Electronic energy + Delta-G solvation = -13074.089315 eV Core-core repulsion = 10898.080108 eV Total energy + Delta-G solvation = -2176.009207 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.17748 -37.69198 -35.15502 -32.86687 -32.12717 -29.83379 -28.12096 -26.71561 -24.85982 -22.61220 -21.23101 -19.52954 -18.52453 -17.12093 -16.52945 -15.97501 -15.69330 -15.47799 -14.51018 -14.44434 -14.31993 -14.06713 -13.63191 -13.35367 -12.87791 -12.80004 -12.56341 -12.55467 -12.26869 -12.04211 -11.72758 -11.68606 -11.48639 -10.61489 -10.56322 -9.64357 -8.76089 -8.20341 -6.36281 0.09606 0.52017 1.38967 1.42197 1.50080 1.65722 2.40163 2.99788 3.08282 3.49869 3.79535 4.04532 4.07120 4.20502 4.46369 4.61042 4.66432 4.72299 4.77293 4.88950 4.91915 5.01480 5.16186 5.18161 5.28935 5.32664 5.54416 5.69945 5.70764 5.73602 5.83357 6.05353 6.15503 6.21197 6.75442 7.32559 8.86939 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054282 B = 0.005986 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.698190 B = 4676.622019 C = 4757.708906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.057 4.057 9 C -0.086 4.086 10 C 0.070 3.930 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.270 1.270 19 C -0.179 4.179 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.151 0.849 24 H 0.132 0.868 25 H 0.138 0.862 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.012 0.988 29 H 0.005 0.995 30 H 0.267 0.733 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 6.543 -0.855 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.087 4.087 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.093 4.093 9 C -0.086 4.086 10 C 0.033 3.967 11 C -0.571 4.571 12 H 0.073 0.927 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.195 1.195 19 C -0.197 4.197 20 H 0.099 0.901 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.169 0.831 24 H 0.149 0.851 25 H 0.156 0.844 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.640 6.461 -0.900 17.873 hybrid contribution 1.128 -0.296 0.624 1.323 sum -15.512 6.165 -0.276 16.694 Atomic orbital electron populations 1.20788 0.88425 1.03779 1.03214 1.20271 0.97727 0.92168 0.99488 1.21176 0.93025 0.98849 1.00997 1.21083 0.94797 0.96541 1.00890 1.19959 0.92955 0.94768 1.00989 1.20648 0.94465 0.95398 1.01356 1.20433 0.91207 0.99234 1.01736 1.19882 0.89322 0.96870 1.03225 1.22898 0.96157 0.95354 0.94189 1.17766 0.88017 0.94400 0.96541 1.21314 1.03832 1.39242 0.92720 0.92726 1.25919 0.96141 0.95217 1.01908 1.70069 1.11184 1.42189 1.33431 0.85472 0.77636 0.78712 0.79086 1.19054 1.20369 1.19501 1.21619 0.93927 0.96076 1.08100 0.90125 0.90817 0.90164 0.83111 0.85053 0.84370 0.88489 0.87808 0.97022 0.97648 0.92429 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.10 -2.28 5.89 -19.78 -0.12 -2.40 16 3 C -0.12 -2.97 9.67 22.22 0.21 -2.76 16 4 C -0.12 -3.44 10.10 22.55 0.23 -3.21 16 5 C -0.09 -3.20 6.23 -20.15 -0.13 -3.32 16 6 C -0.12 -4.14 6.38 -19.62 -0.13 -4.27 16 7 C -0.11 -3.01 9.68 22.16 0.21 -2.80 16 8 C -0.06 -2.20 6.74 29.30 0.20 -2.00 16 9 C -0.09 -3.95 5.54 -17.32 -0.10 -4.04 16 10 C 0.07 3.80 5.48 29.11 0.16 3.96 16 11 C -0.53 -30.86 9.09 25.60 0.23 -30.63 16 12 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 15 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C -0.18 -7.64 10.63 23.71 0.25 -7.39 16 20 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 22 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 23 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 24 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 25 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -65.43 270.21 5.62 -59.81 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.10 Total: 8.52 kcal Atomic # 6 Polarization: -61.11 SS G_CDS: 2.21 Total: -58.90 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.43 5.62 -59.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.778 kcal (2) G-P(sol) polarization free energy of solvation -65.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds