Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46963 * 2 1 4 4 C 1.53001 * 109.47420 * 120.00439 * 2 1 3 5 5 C 1.52999 * 112.99672 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46623 * 177.83840 * 5 4 2 7 7 O 1.42906 * 109.46752 * 179.97438 * 6 5 4 8 8 C 1.34927 * 116.99722 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99814 * 359.97438 * 8 7 6 10 10 C 1.38634 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31582 * 119.99607 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00135 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47048 * 89.99751 * 12 10 8 14 14 H 1.48505 * 109.46870 * 209.99575 * 12 10 8 15 15 H 1.48496 * 109.47114 * 329.99654 * 12 10 8 16 16 C 1.54035 * 113.92403 * 311.93213 * 4 2 1 17 17 O 1.44170 * 85.52105 * 91.65781 * 16 4 2 18 18 C 1.44184 * 93.33953 * 24.19113 * 17 16 4 19 19 H 1.08994 * 109.46782 * 299.99726 * 1 2 3 20 20 H 1.08994 * 109.47273 * 59.99954 * 1 2 3 21 21 H 1.09000 * 109.46706 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46397 * 240.00424 * 2 1 3 23 23 H 1.09002 * 109.47469 * 60.00488 * 3 2 1 24 24 H 1.09007 * 109.46985 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47618 * 300.00345 * 3 2 1 26 26 H 1.09000 * 109.47486 * 57.84012 * 5 4 2 27 27 H 1.09001 * 109.47362 * 297.83289 * 5 4 2 28 28 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 29 29 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 30 30 H 0.97000 * 119.99836 * 180.02562 * 11 10 8 31 31 H 1.09001 * 113.86436 * 205.81443 * 16 4 2 32 32 H 1.09012 * 113.86338 * 337.51054 * 16 4 2 33 33 H 1.08997 * 113.86849 * 221.65842 * 18 17 16 34 34 H 1.08996 * 113.86214 * 89.95145 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5672 -0.7678 1.3309 6 6 3.9875 -1.4559 2.6312 7 8 5.4139 -1.4999 2.7073 8 6 5.9514 -2.0796 3.8007 9 1 5.3086 -2.4836 4.5688 10 6 7.3287 -2.1555 3.9388 11 7 8.1118 -1.6627 3.0032 12 14 8.0729 -2.9587 5.4522 13 1 8.2674 -4.4088 5.1979 14 1 9.3836 -2.3287 5.7531 15 1 7.1593 -2.7772 6.6087 16 6 1.3613 -0.2656 2.5546 17 8 0.4265 -1.3354 2.3092 18 6 1.3614 -2.0806 1.5032 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 3.9632 0.2476 1.3127 27 1 3.9598 -1.3262 0.4811 28 1 3.5950 -0.8976 3.4810 29 1 3.5916 -2.4713 2.6494 30 1 9.0755 -1.7162 3.0996 31 1 1.9741 -0.4107 3.4443 32 1 0.9184 0.7288 2.4975 33 1 0.9187 -2.5258 0.6122 34 1 1.9742 -2.7799 2.0718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = -58.569965 kcal Electronic energy + Delta-G solvation = -14932.004120 eV Core-core repulsion = 12445.714086 eV Total energy + Delta-G solvation = -2486.290034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02393 -36.28327 -34.94572 -32.28397 -31.01004 -27.45958 -26.48849 -26.28176 -24.26907 -23.22416 -20.91676 -17.92483 -17.62372 -16.41906 -15.92747 -15.36263 -14.88093 -14.67670 -13.96038 -13.81245 -13.46198 -13.02033 -12.70503 -12.23837 -11.99817 -11.88755 -11.43300 -11.28574 -11.08779 -11.05066 -10.79403 -10.57702 -10.18430 -10.07624 -9.94288 -9.41604 -9.35390 -8.96064 -7.95526 -5.95186 -3.58957 3.31180 3.33807 3.37817 3.90272 4.29843 4.32607 4.71891 4.95370 5.21054 5.27874 5.35042 5.46790 5.51454 5.54580 5.63138 5.69847 5.86471 5.89664 5.96896 5.97605 6.03191 6.14974 6.28540 6.32451 6.35264 6.40708 6.50492 6.65726 6.77862 6.80275 7.47726 8.43145 9.48437 10.17219 11.26104 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053981 B = 0.006570 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.574300 B = 4260.552094 C = 4568.836619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.108 4.108 6 C 0.070 3.930 7 O -0.296 6.296 8 C -0.361 4.361 9 H 0.062 0.938 10 C 0.023 3.977 11 N -0.889 5.889 12 Si 0.925 3.075 13 H -0.281 1.281 14 H -0.283 1.283 15 H -0.275 1.275 16 C 0.035 3.965 17 O -0.381 6.381 18 C 0.036 3.964 19 H 0.058 0.942 20 H 0.047 0.953 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 3.136 -4.709 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.206 4.206 4 C -0.116 4.116 5 C -0.145 4.145 6 C -0.008 4.008 7 O -0.212 6.212 8 C -0.440 4.440 9 H 0.079 0.921 10 C -0.176 4.176 11 N -0.533 5.533 12 Si 0.752 3.248 13 H -0.207 1.207 14 H -0.209 1.209 15 H -0.200 1.200 16 C -0.041 4.041 17 O -0.300 6.300 18 C -0.041 4.041 19 H 0.077 0.923 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.241 3.194 -4.808 14.444 hybrid contribution 0.460 -0.503 0.902 1.131 sum -12.781 2.691 -3.906 13.633 Atomic orbital electron populations 1.21862 0.94781 1.02110 1.01195 1.20810 0.95749 0.96149 0.96134 1.21863 1.01884 0.95420 1.01448 1.23585 0.96288 0.95711 0.95989 1.21392 0.92015 1.02188 0.98942 1.22293 0.86644 0.96921 0.94916 1.85618 1.13982 1.79034 1.42537 1.20802 0.90425 1.35455 0.97307 0.92076 1.24956 0.95261 0.98952 0.98393 1.70022 1.03393 1.46651 1.33196 0.85970 0.78712 0.78947 0.81173 1.20687 1.20860 1.20042 1.24248 0.90068 0.92282 0.97523 1.89595 1.32882 1.35470 1.72064 1.24212 0.90074 0.94830 0.94966 0.92337 0.93369 0.92396 0.90708 0.92704 0.91802 0.92772 0.90810 0.91109 0.95821 0.95911 0.93222 0.89344 0.89656 0.89658 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.91 37.16 0.29 -1.28 16 2 C -0.07 -0.84 2.65 -90.62 -0.24 -1.08 16 3 C -0.15 -1.69 8.80 37.15 0.33 -1.36 16 4 C -0.12 -1.64 0.95 -153.43 -0.15 -1.78 16 5 C -0.11 -1.91 5.04 -26.73 -0.13 -2.04 16 6 C 0.07 1.52 5.24 37.16 0.19 1.71 16 7 O -0.30 -8.59 9.78 -16.50 -0.16 -8.75 16 8 C -0.36 -10.76 9.89 30.88 0.31 -10.45 16 9 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 10 C 0.02 0.67 5.49 -17.51 -0.10 0.57 16 11 N -0.89 -28.15 13.67 55.48 0.76 -27.40 16 12 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.04 0.50 7.34 37.61 0.28 0.78 16 17 O -0.38 -5.81 10.86 -35.23 -0.38 -6.19 16 18 C 0.04 0.51 7.53 37.61 0.28 0.79 16 19 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.60 7.24 -51.93 -0.38 0.23 16 24 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.33 6.68 -51.93 -0.35 0.98 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.51 6.04 -51.93 -0.31 0.19 16 29 H 0.02 0.49 6.12 -51.93 -0.32 0.17 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.35 5.73 -51.93 -0.30 1.06 16 32 H 0.09 1.07 6.51 -51.92 -0.34 0.73 16 33 H 0.09 1.05 7.33 -51.93 -0.38 0.67 16 34 H 0.09 1.32 5.93 -51.93 -0.31 1.02 16 LS Contribution 266.01 15.07 4.01 4.01 Total: -1.00 -32.88 266.01 -4.67 -37.55 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.94 Total: -2.30 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 1.06 Total: -14.15 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.76 Total: -27.40 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.54 Total: -14.94 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.88 -4.67 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.020 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds