Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38375 * 119.81434 * 2 1 4 4 C 1.38466 * 120.10909 * 179.72682 * 3 2 1 5 5 C 1.37547 * 119.94935 * 359.97438 * 4 3 2 6 6 C 1.39623 * 120.49437 * 0.02562 * 5 4 3 7 7 C 1.37908 * 119.81465 * 179.72740 * 2 1 3 8 8 C 1.47453 * 108.89669 * 180.02562 * 6 5 4 9 9 C 1.50700 * 124.46447 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46889 * 275.00098 * 9 8 6 11 11 H 1.08000 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99860 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00241 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99632 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47445 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46747 * 120.00027 * 14 12 10 17 17 H 1.48492 * 109.47235 * 239.99952 * 14 12 10 18 18 C 1.32149 * 111.07034 * 359.97438 * 8 6 5 19 19 C 1.50927 * 133.20611 * 180.02562 * 5 4 3 20 20 H 1.09000 * 109.46949 * 89.99739 * 1 2 3 21 21 H 1.08997 * 109.46845 * 210.00178 * 1 2 3 22 22 H 1.08995 * 109.46985 * 330.00133 * 1 2 3 23 23 H 1.08002 * 119.94373 * 359.69964 * 3 2 1 24 24 H 1.08000 * 120.02581 * 180.02562 * 4 3 2 25 25 H 1.07991 * 120.05076 * 0.25035 * 7 2 1 26 26 H 1.09004 * 109.47389 * 34.99368 * 9 8 6 27 27 H 1.08998 * 109.47599 * 154.99773 * 9 8 6 28 28 H 0.97005 * 120.00443 * 180.02562 * 13 12 10 29 29 H 1.08003 * 125.86240 * 180.02562 * 18 8 6 30 30 H 1.09000 * 110.25037 * 298.99629 * 19 5 4 31 31 H 1.08996 * 110.25061 * 60.99943 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2006 0.0000 4 6 3.5796 1.2077 0.0057 5 6 4.2724 0.0195 0.0119 6 6 3.5900 -1.1986 0.0120 7 6 2.1927 -1.1965 0.0057 8 6 4.5736 -2.2971 0.0199 9 6 4.2168 -3.7612 0.0228 10 6 3.9711 -4.2155 1.4386 11 1 4.0643 -3.5142 2.2546 12 6 3.6271 -5.5265 1.6921 13 7 3.5130 -6.3803 0.6984 14 14 3.3232 -6.0897 3.4470 15 1 3.5139 -4.9455 4.3742 16 1 1.9338 -6.5994 3.5697 17 1 4.2797 -7.1718 3.7923 18 6 5.8091 -1.8284 0.0241 19 6 5.7432 -0.3190 0.0195 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6511 2.1336 -0.0049 24 1 4.1152 2.1456 0.0061 25 1 1.6506 -2.1305 0.0061 26 1 3.3155 -3.9168 -0.5702 27 1 5.0376 -4.3361 -0.4059 28 1 3.2707 -7.3025 0.8767 29 1 6.7111 -2.4224 0.0297 30 1 6.2261 0.0771 -0.8738 31 1 6.2180 0.0818 0.9150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261017421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 26.303707 kcal Electronic energy + Delta-G solvation = -13381.467777 eV Core-core repulsion = 11206.167061 eV Total energy + Delta-G solvation = -2175.300716 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80257 -36.12939 -33.21797 -31.68891 -29.71426 -29.23210 -26.15694 -24.91038 -22.64593 -21.74506 -20.08927 -17.84360 -16.28131 -15.33556 -14.90465 -14.57161 -14.14419 -14.04958 -13.23608 -13.11681 -12.86829 -12.28193 -11.93645 -11.77672 -11.35820 -11.31258 -11.20466 -10.94571 -10.57161 -10.45333 -10.16000 -9.74174 -9.43801 -8.84151 -8.39873 -8.11175 -7.39095 -6.01820 -4.04697 1.49955 1.82081 3.20673 3.30239 3.38091 3.44131 4.36935 4.50869 4.90561 5.17355 5.20224 5.33350 5.39824 5.52081 5.73590 5.80906 5.86974 5.93720 6.02404 6.07578 6.14872 6.41196 6.50222 6.59695 6.82968 6.98880 7.10923 7.22160 7.44133 7.49721 7.68572 7.92442 7.95177 8.37502 9.00808 9.58819 11.08298 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.008920 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.167915 B = 3138.102539 C = 3707.592189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.044 4.044 7 C -0.088 4.088 8 C -0.046 4.046 9 C 0.057 3.943 10 C -0.507 4.507 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.202 4.202 19 C -0.054 4.054 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.026 0.974 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 12.833 -1.857 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.044 4.044 7 C -0.106 4.106 8 C -0.046 4.046 9 C 0.020 3.980 10 C -0.545 4.545 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.220 4.220 19 C -0.090 4.090 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.144 0.856 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.394 12.658 -1.890 12.874 hybrid contribution -0.185 -0.455 1.000 1.114 sum -1.579 12.203 -0.890 12.337 Atomic orbital electron populations 1.20741 0.91537 1.02463 1.01896 1.19712 0.95761 0.92952 1.01305 1.20850 0.93687 0.97044 1.03277 1.20144 0.93684 0.96283 1.02288 1.20592 0.96357 0.93561 1.01199 1.19943 0.93201 0.93662 0.97608 1.20909 0.93106 0.97667 0.98962 1.21339 0.91793 0.96475 0.95004 1.18084 0.97437 0.84891 0.97576 1.21085 1.46620 0.94678 0.92112 0.92552 1.25003 0.95530 0.96726 0.97125 1.69964 1.48492 1.04208 1.30776 0.86513 0.77832 0.78689 0.84913 1.19699 1.20965 1.20943 1.23276 0.97726 0.93948 1.07071 1.19835 0.92226 0.95369 1.01612 0.91605 0.91483 0.92030 0.86542 0.86753 0.85576 0.95528 0.95285 0.92959 0.84539 0.89658 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.00 36.01 0.36 -1.04 16 2 C -0.10 -1.58 5.87 -104.69 -0.61 -2.20 16 3 C -0.13 -1.94 9.70 -39.45 -0.38 -2.32 16 4 C -0.11 -1.64 10.03 -39.75 -0.40 -2.03 16 5 C -0.12 -2.11 6.38 -104.25 -0.66 -2.77 16 6 C -0.04 -0.92 6.17 -105.07 -0.65 -1.57 16 7 C -0.09 -1.73 9.72 -39.15 -0.38 -2.11 16 8 C -0.05 -1.04 5.33 -102.80 -0.55 -1.59 16 9 C 0.06 1.51 5.38 -29.03 -0.16 1.35 16 10 C -0.51 -14.49 9.09 -34.44 -0.31 -14.81 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.20 -3.96 10.91 -36.05 -0.39 -4.35 16 19 C -0.05 -0.89 6.76 -28.74 -0.19 -1.08 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 22 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 23 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 25 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.14 2.49 8.06 -52.48 -0.42 2.06 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 270.07 15.07 4.07 4.07 Total: -1.00 -30.64 270.07 -8.83 -39.47 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.18 Total: -1.38 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -4.43 Total: -32.99 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.64 -8.83 -39.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.770 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds