Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38375 * 119.81434 * 2 1 4 4 C 1.38466 * 120.10909 * 179.72682 * 3 2 1 5 5 C 1.37547 * 119.94935 * 359.97438 * 4 3 2 6 6 C 1.39623 * 120.49437 * 0.02562 * 5 4 3 7 7 C 1.37908 * 119.81465 * 179.72740 * 2 1 3 8 8 C 1.47453 * 108.89669 * 180.02562 * 6 5 4 9 9 C 1.50700 * 124.46447 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46889 * 275.00098 * 9 8 6 11 11 H 1.08000 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99860 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00241 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99632 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47445 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46747 * 120.00027 * 14 12 10 17 17 H 1.48492 * 109.47235 * 239.99952 * 14 12 10 18 18 C 1.32149 * 111.07034 * 359.97438 * 8 6 5 19 19 C 1.50927 * 133.20611 * 180.02562 * 5 4 3 20 20 H 1.09000 * 109.46949 * 89.99739 * 1 2 3 21 21 H 1.08997 * 109.46845 * 210.00178 * 1 2 3 22 22 H 1.08995 * 109.46985 * 330.00133 * 1 2 3 23 23 H 1.08002 * 119.94373 * 359.69964 * 3 2 1 24 24 H 1.08000 * 120.02581 * 180.02562 * 4 3 2 25 25 H 1.07991 * 120.05076 * 0.25035 * 7 2 1 26 26 H 1.09004 * 109.47389 * 34.99368 * 9 8 6 27 27 H 1.08998 * 109.47599 * 154.99773 * 9 8 6 28 28 H 0.97005 * 120.00443 * 180.02562 * 13 12 10 29 29 H 1.08003 * 125.86240 * 180.02562 * 18 8 6 30 30 H 1.09000 * 110.25037 * 298.99629 * 19 5 4 31 31 H 1.08996 * 110.25061 * 60.99943 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2006 0.0000 4 6 3.5796 1.2077 0.0057 5 6 4.2724 0.0195 0.0119 6 6 3.5900 -1.1986 0.0120 7 6 2.1927 -1.1965 0.0057 8 6 4.5736 -2.2971 0.0199 9 6 4.2168 -3.7612 0.0228 10 6 3.9711 -4.2155 1.4386 11 1 4.0643 -3.5142 2.2546 12 6 3.6271 -5.5265 1.6921 13 7 3.5130 -6.3803 0.6984 14 14 3.3232 -6.0897 3.4470 15 1 3.5139 -4.9455 4.3742 16 1 1.9338 -6.5994 3.5697 17 1 4.2797 -7.1718 3.7923 18 6 5.8091 -1.8284 0.0241 19 6 5.7432 -0.3190 0.0195 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6511 2.1336 -0.0049 24 1 4.1152 2.1456 0.0061 25 1 1.6506 -2.1305 0.0061 26 1 3.3155 -3.9168 -0.5702 27 1 5.0376 -4.3361 -0.4059 28 1 3.2707 -7.3025 0.8767 29 1 6.7111 -2.4224 0.0297 30 1 6.2261 0.0771 -0.8738 31 1 6.2180 0.0818 0.9150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261017421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 10.275477 kcal Electronic energy + Delta-G solvation = -13382.162813 eV Core-core repulsion = 11206.167061 eV Total energy + Delta-G solvation = -2175.995752 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16961 -37.52780 -35.27823 -33.18934 -31.14158 -30.85390 -27.80339 -26.33899 -24.52928 -23.17356 -21.37205 -19.38311 -18.53731 -16.94815 -16.28868 -16.15626 -15.63527 -15.37427 -14.62646 -14.45158 -14.29384 -14.21240 -13.51697 -13.27839 -12.94044 -12.84056 -12.62351 -12.45526 -12.42915 -12.05812 -11.71132 -11.67813 -11.33407 -10.64477 -10.47589 -9.38967 -8.89016 -8.23240 -6.36745 0.13362 0.52020 1.34594 1.35415 1.48998 1.72607 2.37855 3.02357 3.06432 3.62745 3.80707 4.04336 4.16012 4.20804 4.53677 4.58770 4.71358 4.81050 4.83787 4.85234 4.94823 5.01758 5.08912 5.26485 5.28357 5.32627 5.51708 5.68512 5.71552 5.83071 5.89732 6.07660 6.20239 6.24330 6.75501 7.31606 8.86335 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.008920 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.167915 B = 3138.102539 C = 3707.592189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.125 4.125 6 C -0.084 4.084 7 C -0.124 4.124 8 C -0.095 4.095 9 C 0.068 3.932 10 C -0.524 4.524 11 H 0.049 0.951 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.185 4.185 19 C -0.047 4.047 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.159 0.841 24 H 0.157 0.843 25 H 0.094 0.906 26 H -0.008 1.008 27 H 0.003 0.997 28 H 0.266 0.734 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 15.947 -0.827 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.084 4.084 7 C -0.142 4.142 8 C -0.095 4.095 9 C 0.031 3.969 10 C -0.562 4.562 11 H 0.067 0.933 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.202 4.202 19 C -0.082 4.082 20 H 0.098 0.902 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.177 0.823 24 H 0.174 0.826 25 H 0.112 0.888 26 H 0.010 0.990 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.137 0.863 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.221 15.777 -0.867 15.848 hybrid contribution -0.238 -1.393 0.617 1.542 sum -1.460 14.385 -0.250 14.461 Atomic orbital electron populations 1.20805 0.89278 1.03355 1.03058 1.20087 0.97534 0.92301 0.99954 1.21368 0.93920 0.97792 1.00895 1.20639 0.94098 0.96810 1.00003 1.20890 0.96938 0.93225 1.01459 1.20028 0.93640 0.94408 1.00313 1.20917 0.93202 0.98101 1.02030 1.21194 0.94234 0.94769 0.99332 1.17768 0.94802 0.88217 0.96081 1.21335 1.47010 0.95049 0.92830 0.93306 1.25945 0.94937 0.96697 1.01891 1.70087 1.49055 1.04698 1.33220 0.85387 0.78151 0.78347 0.79135 1.19135 1.20042 1.19716 1.23695 0.96586 0.96753 1.03200 1.19887 0.91869 0.92293 1.04158 0.90230 0.92598 0.89113 0.82295 0.82561 0.88822 0.98954 0.97883 0.92523 0.83893 0.86344 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 10.00 71.24 0.71 -1.89 16 2 C -0.10 -3.10 5.87 -19.91 -0.12 -3.22 16 3 C -0.12 -3.15 9.70 22.36 0.22 -2.93 16 4 C -0.10 -2.61 10.03 22.16 0.22 -2.38 16 5 C -0.13 -4.24 6.38 -19.62 -0.13 -4.37 16 6 C -0.08 -3.61 6.17 -20.16 -0.12 -3.74 16 7 C -0.12 -5.12 9.72 22.55 0.22 -4.91 16 8 C -0.10 -4.54 5.33 -18.43 -0.10 -4.64 16 9 C 0.07 3.92 5.38 29.10 0.16 4.07 16 10 C -0.52 -31.65 9.09 25.60 0.23 -31.42 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 12 C 0.00 0.19 5.46 84.66 0.46 0.65 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 14 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 C -0.18 -7.23 10.91 24.81 0.27 -6.96 16 19 C -0.05 -1.39 6.76 29.29 0.20 -1.19 16 20 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.05 1.44 8.08 -2.39 -0.02 1.43 16 22 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 23 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 24 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 25 H 0.09 4.27 8.06 -2.92 -0.02 4.24 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.00 0.17 8.12 -2.39 -0.02 0.15 16 28 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 29 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 30 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -70.95 270.07 5.64 -65.32 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.10 Total: 7.37 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 2.23 Total: -62.92 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.28 Total: -57.66 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -70.95 5.64 -65.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.592 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds