Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38608 * 119.96267 * 2 1 4 4 C 1.38519 * 120.56475 * 179.69944 * 3 2 1 5 5 C 1.37855 * 120.20505 * 0.63369 * 4 3 2 6 6 C 1.40137 * 119.55045 * 0.46156 * 5 4 3 7 7 C 1.37658 * 119.95886 * 180.02562 * 2 1 3 8 8 C 1.50554 * 120.45365 * 358.78493 * 7 2 1 9 9 C 1.52619 * 110.36200 * 144.25788 * 8 7 2 10 10 C 1.50477 * 110.74126 * 50.20098 * 9 8 7 11 11 C 1.38802 * 119.76331 * 144.04130 * 10 9 8 12 12 H 1.07995 * 120.00253 * 203.73867 * 11 10 9 13 13 C 1.40667 * 119.99812 * 23.74833 * 11 10 9 14 14 N 1.30539 * 119.99772 * 11.21362 * 13 11 10 15 15 Si 1.86794 * 120.00178 * 191.21709 * 13 11 10 16 16 H 1.48510 * 109.47260 * 94.98047 * 15 13 11 17 17 H 1.48497 * 109.47128 * 214.98212 * 15 13 11 18 18 H 1.48505 * 109.47246 * 334.98473 * 15 13 11 19 19 C 1.38200 * 120.47824 * 324.07390 * 10 9 8 20 20 H 1.08999 * 109.46887 * 269.97264 * 1 2 3 21 21 H 1.08989 * 109.47169 * 29.97627 * 1 2 3 22 22 H 1.09008 * 109.47246 * 149.98017 * 1 2 3 23 23 H 1.08004 * 119.71652 * 359.72078 * 3 2 1 24 24 H 1.07995 * 119.89830 * 180.65753 * 4 3 2 25 25 H 1.07994 * 120.22259 * 180.42201 * 5 4 3 26 26 H 1.08998 * 109.32023 * 23.98639 * 8 7 2 27 27 H 1.09000 * 109.31987 * 264.53168 * 8 7 2 28 28 H 1.09001 * 109.22557 * 289.88012 * 9 8 7 29 29 H 1.08998 * 109.22471 * 170.52581 * 9 8 7 30 30 H 0.97000 * 119.99808 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.35766 * 182.23573 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2008 0.0000 4 6 3.5844 1.2154 0.0063 5 6 4.2904 0.0314 -0.0006 6 6 3.5975 -1.1864 -0.0238 7 6 2.1944 -1.1927 -0.0005 8 6 1.4513 -2.5017 0.0264 9 6 2.1836 -3.5454 -0.8125 10 6 3.6393 -3.6060 -0.4359 11 6 4.3027 -4.8252 -0.4432 12 1 5.1854 -4.9633 0.1635 13 6 3.8255 -5.8808 -1.2411 14 7 2.9002 -5.6570 -2.1343 15 14 4.5156 -7.6028 -1.0224 16 1 3.6412 -8.3733 -0.1019 17 1 4.5704 -8.2851 -2.3401 18 1 5.8837 -7.5189 -0.4510 19 6 4.3202 -2.4566 -0.0821 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3634 -0.8899 -0.5142 23 1 1.6540 2.1331 -0.0046 24 1 4.1128 2.1572 0.0169 25 1 5.3702 0.0424 0.0111 26 1 0.4485 -2.3555 -0.3749 27 1 1.3774 -2.8533 1.0555 28 1 2.0964 -3.2839 -1.8670 29 1 1.7292 -4.5222 -0.6469 30 1 2.5708 -6.3850 -2.6843 31 1 5.3735 -2.4967 0.1529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = 5.052425 kcal Electronic energy + Delta-G solvation = -13648.710319 eV Core-core repulsion = 11472.488079 eV Total energy + Delta-G solvation = -2176.222240 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.74745 -35.70792 -33.12752 -32.51991 -29.46803 -28.65026 -25.94674 -25.25436 -22.36785 -21.08994 -19.63853 -17.97682 -16.10746 -15.44494 -15.18282 -14.40563 -14.00578 -13.27953 -13.14970 -12.63973 -12.44770 -12.06308 -11.73136 -11.56540 -11.50301 -11.24206 -11.07421 -10.65995 -10.57143 -10.45447 -10.18906 -9.53202 -9.23549 -9.10863 -8.50672 -7.62560 -7.15183 -6.75242 -4.43495 2.20895 2.41988 2.86327 2.93422 2.97954 3.69894 3.73823 4.70688 5.25059 5.62079 5.66436 5.90201 5.97296 6.04135 6.11341 6.27438 6.35901 6.44182 6.57868 6.59373 6.77310 6.83902 6.95759 7.16124 7.17251 7.34591 7.44268 7.50264 7.60008 7.65511 7.91603 8.12824 8.24652 8.30318 8.83452 8.90588 9.84699 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050176 B = 0.008147 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.896991 B = 3436.200878 C = 3859.334031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.103 4.103 5 C -0.187 4.187 6 C 0.059 3.941 7 C -0.141 4.141 8 C -0.073 4.073 9 C -0.064 4.064 10 C 0.117 3.883 11 C -0.430 4.430 12 H 0.084 0.916 13 C 0.068 3.932 14 N -0.776 5.776 15 Si 0.918 3.082 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.396 4.396 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.287 0.713 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 2.205 1.384 4.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.220 4.220 4 C -0.121 4.121 5 C -0.206 4.206 6 C 0.059 3.941 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.101 4.101 10 C 0.114 3.886 11 C -0.458 4.458 12 H 0.102 0.898 13 C -0.153 4.153 14 N -0.399 5.399 15 Si 0.741 3.259 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.417 4.417 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.305 2.059 1.174 4.067 hybrid contribution 0.429 -0.660 -0.009 0.788 sum -2.875 1.399 1.165 3.403 Atomic orbital electron populations 1.20781 0.92954 1.01750 1.01250 1.19416 0.94562 0.92956 1.00096 1.20485 0.93941 0.96052 1.11571 1.20721 0.94042 0.96890 1.00467 1.20958 0.98422 0.92047 1.09159 1.18851 0.91629 0.93597 0.90027 1.19707 0.93434 0.93688 1.07281 1.20404 0.97540 0.93148 0.99889 1.20284 0.94085 0.97033 0.98666 1.19251 0.91995 0.91930 0.85430 1.19641 1.10442 0.95264 1.20413 0.89804 1.26320 0.93636 1.01980 0.93385 1.69714 1.21397 1.35027 1.13786 0.86118 0.80675 0.80193 0.78864 1.19014 1.19898 1.18159 1.20990 0.97279 0.90139 1.33297 0.92199 0.92706 0.91613 0.88381 0.88246 0.87837 0.92295 0.92657 0.91596 0.91038 0.90133 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.58 36.01 0.34 -1.45 16 2 C -0.07 -1.43 5.87 -104.70 -0.61 -2.04 16 3 C -0.20 -3.94 9.70 -39.34 -0.38 -4.33 16 4 C -0.10 -2.05 10.03 -39.62 -0.40 -2.45 16 5 C -0.19 -4.17 9.85 -39.01 -0.38 -4.55 16 6 C 0.06 1.45 5.80 -105.18 -0.61 0.84 16 7 C -0.14 -3.22 5.68 -104.12 -0.59 -3.81 16 8 C -0.07 -1.58 5.61 -28.15 -0.16 -1.73 16 9 C -0.06 -1.53 4.27 -28.19 -0.12 -1.65 16 10 C 0.12 3.05 5.49 -104.54 -0.57 2.48 16 11 C -0.43 -10.98 8.94 -38.46 -0.34 -11.32 16 12 H 0.08 2.09 7.88 -52.49 -0.41 1.68 16 13 C 0.07 1.60 5.14 -17.18 -0.09 1.51 16 14 N -0.78 -18.43 10.69 55.59 0.59 -17.84 16 15 Si 0.92 17.47 29.58 -169.99 -5.03 12.44 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 19 C -0.40 -10.33 9.68 -36.37 -0.35 -10.68 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 22 H 0.07 1.04 5.94 -51.92 -0.31 0.73 16 23 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 24 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 26 H 0.06 1.13 5.74 -51.93 -0.30 0.83 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.67 7.96 -51.93 -0.41 1.25 16 29 H 0.07 1.72 6.65 -51.93 -0.35 1.37 16 30 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 31 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 256.29 15.07 3.86 3.86 Total: -1.00 -26.49 256.29 -8.71 -35.20 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.87 Total: 5.51 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: -4.27 Total: -39.17 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: 0.59 Total: -17.84 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.49 -8.71 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.250 kcal (2) G-P(sol) polarization free energy of solvation -26.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds