Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38608 * 119.96267 * 2 1 4 4 C 1.38519 * 120.56475 * 179.69944 * 3 2 1 5 5 C 1.37855 * 120.20505 * 0.63369 * 4 3 2 6 6 C 1.40137 * 119.55045 * 0.46156 * 5 4 3 7 7 C 1.37658 * 119.95886 * 180.02562 * 2 1 3 8 8 C 1.50554 * 120.45365 * 358.78493 * 7 2 1 9 9 C 1.52619 * 110.36200 * 144.25788 * 8 7 2 10 10 C 1.50477 * 110.74126 * 50.20098 * 9 8 7 11 11 C 1.38802 * 119.76331 * 144.04130 * 10 9 8 12 12 H 1.07995 * 120.00253 * 203.73867 * 11 10 9 13 13 C 1.40667 * 119.99812 * 23.74833 * 11 10 9 14 14 N 1.30539 * 119.99772 * 11.21362 * 13 11 10 15 15 Si 1.86794 * 120.00178 * 191.21709 * 13 11 10 16 16 H 1.48510 * 109.47260 * 94.98047 * 15 13 11 17 17 H 1.48497 * 109.47128 * 214.98212 * 15 13 11 18 18 H 1.48505 * 109.47246 * 334.98473 * 15 13 11 19 19 C 1.38200 * 120.47824 * 324.07390 * 10 9 8 20 20 H 1.08999 * 109.46887 * 269.97264 * 1 2 3 21 21 H 1.08989 * 109.47169 * 29.97627 * 1 2 3 22 22 H 1.09008 * 109.47246 * 149.98017 * 1 2 3 23 23 H 1.08004 * 119.71652 * 359.72078 * 3 2 1 24 24 H 1.07995 * 119.89830 * 180.65753 * 4 3 2 25 25 H 1.07994 * 120.22259 * 180.42201 * 5 4 3 26 26 H 1.08998 * 109.32023 * 23.98639 * 8 7 2 27 27 H 1.09000 * 109.31987 * 264.53168 * 8 7 2 28 28 H 1.09001 * 109.22557 * 289.88012 * 9 8 7 29 29 H 1.08998 * 109.22471 * 170.52581 * 9 8 7 30 30 H 0.97000 * 119.99808 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.35766 * 182.23573 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2008 0.0000 4 6 3.5844 1.2154 0.0063 5 6 4.2904 0.0314 -0.0006 6 6 3.5975 -1.1864 -0.0238 7 6 2.1944 -1.1927 -0.0005 8 6 1.4513 -2.5017 0.0264 9 6 2.1836 -3.5454 -0.8125 10 6 3.6393 -3.6060 -0.4359 11 6 4.3027 -4.8252 -0.4432 12 1 5.1854 -4.9633 0.1635 13 6 3.8255 -5.8808 -1.2411 14 7 2.9002 -5.6570 -2.1343 15 14 4.5156 -7.6028 -1.0224 16 1 3.6412 -8.3733 -0.1019 17 1 4.5704 -8.2851 -2.3401 18 1 5.8837 -7.5189 -0.4510 19 6 4.3202 -2.4566 -0.0821 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3634 -0.8899 -0.5142 23 1 1.6540 2.1331 -0.0046 24 1 4.1128 2.1572 0.0169 25 1 5.3702 0.0424 0.0111 26 1 0.4485 -2.3555 -0.3749 27 1 1.3774 -2.8533 1.0555 28 1 2.0964 -3.2839 -1.8670 29 1 1.7292 -4.5222 -0.6469 30 1 2.5708 -6.3850 -2.6843 31 1 5.3735 -2.4967 0.1529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = -6.842174 kcal Electronic energy + Delta-G solvation = -13649.226108 eV Core-core repulsion = 11472.488079 eV Total energy + Delta-G solvation = -2176.738029 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43697 -37.50526 -34.89767 -34.12893 -31.25191 -30.37686 -27.45796 -27.06551 -24.16350 -22.83196 -21.29276 -19.76259 -17.99414 -17.17634 -16.80352 -16.01920 -15.71018 -14.95189 -14.74292 -14.24527 -14.07489 -13.64107 -13.35414 -13.21866 -13.12678 -12.83859 -12.67586 -12.44269 -12.19325 -12.07613 -11.86633 -11.25578 -11.02079 -10.91785 -10.30550 -9.24763 -8.94372 -8.59035 -6.37340 0.49110 0.76143 1.32020 1.36148 1.50050 1.94963 2.13858 2.92734 3.41901 4.06121 4.21115 4.34210 4.37493 4.52742 4.61384 4.69841 4.82884 4.87266 4.92287 5.00247 5.04073 5.13901 5.24680 5.29859 5.48162 5.52007 5.63749 5.77532 5.86988 5.91063 6.07355 6.33035 6.39292 6.52708 6.91708 7.00019 8.09398 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050176 B = 0.008147 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.896991 B = 3436.200878 C = 3859.334031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.102 4.102 5 C -0.204 4.204 6 C 0.023 3.977 7 C -0.162 4.162 8 C -0.068 4.068 9 C -0.049 4.049 10 C 0.091 3.909 11 C -0.468 4.468 12 H 0.073 0.927 13 C 0.034 3.966 14 N -0.798 5.798 15 Si 0.992 3.008 16 H -0.254 1.254 17 H -0.260 1.260 18 H -0.262 1.262 19 C -0.426 4.426 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.137 0.863 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.300 0.700 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 3.149 1.380 5.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.211 4.211 4 C -0.120 4.120 5 C -0.222 4.222 6 C 0.022 3.978 7 C -0.163 4.163 8 C -0.105 4.105 9 C -0.087 4.087 10 C 0.088 3.912 11 C -0.495 4.495 12 H 0.092 0.908 13 C -0.185 4.185 14 N -0.421 5.421 15 Si 0.811 3.189 16 H -0.178 1.178 17 H -0.184 1.184 18 H -0.186 1.186 19 C -0.447 4.447 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.155 0.845 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.956 3.030 1.168 5.925 hybrid contribution 0.918 -0.746 -0.010 1.182 sum -4.038 2.284 1.158 4.782 Atomic orbital electron populations 1.20843 0.89700 1.03148 1.02802 1.19927 0.97052 0.92152 0.98391 1.21033 0.93989 0.97352 1.08686 1.21131 0.94714 0.97267 0.98890 1.21169 0.98889 0.92526 1.09650 1.19069 0.92971 0.93599 0.92117 1.19956 0.92962 0.95242 1.08091 1.20385 0.98427 0.92195 0.99489 1.20113 0.93236 0.97540 0.97771 1.19593 0.93249 0.92290 0.86108 1.19824 1.11021 0.96635 1.22028 0.90834 1.27116 0.93702 1.05434 0.92298 1.69726 1.21770 1.36769 1.13841 0.85039 0.79621 0.74842 0.79408 1.17829 1.18427 1.18627 1.21052 0.96700 0.91749 1.35243 0.90405 0.90118 0.91457 0.84508 0.84671 0.87755 0.89486 0.92722 0.93586 0.91658 0.88881 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 9.58 71.24 0.68 -2.38 16 2 C -0.08 -2.84 5.87 -19.91 -0.12 -2.96 16 3 C -0.19 -6.76 9.70 22.43 0.22 -6.54 16 4 C -0.10 -3.79 10.03 22.25 0.22 -3.57 16 5 C -0.20 -9.11 9.85 22.64 0.22 -8.89 16 6 C 0.02 1.15 5.80 -20.22 -0.12 1.03 16 7 C -0.16 -7.37 5.68 -19.54 -0.11 -7.48 16 8 C -0.07 -2.95 5.61 29.68 0.17 -2.79 16 9 C -0.05 -2.46 4.27 29.65 0.13 -2.33 16 10 C 0.09 5.00 5.49 -19.81 -0.11 4.89 16 11 C -0.47 -25.19 8.94 23.00 0.21 -24.98 16 12 H 0.07 3.94 7.88 -2.91 -0.02 3.91 16 13 C 0.03 1.63 5.14 85.48 0.44 2.06 16 14 N -0.80 -38.50 10.69 21.96 0.23 -38.27 16 15 Si 0.99 35.92 29.58 68.60 2.03 37.95 16 16 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 17 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 19 C -0.43 -23.74 9.68 24.35 0.24 -23.50 16 20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 22 H 0.07 1.88 5.94 -2.38 -0.01 1.87 16 23 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 24 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 25 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 26 H 0.09 3.20 5.74 -2.39 -0.01 3.19 16 27 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 2.42 7.96 -2.39 -0.02 2.40 16 29 H 0.06 3.24 6.65 -2.39 -0.02 3.23 16 30 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 31 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -59.58 256.29 5.44 -54.13 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.11 Total: 23.62 kcal Atomic # 6 Polarization: -79.50 SS G_CDS: 2.07 Total: -77.43 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.23 Total: -38.27 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -59.58 5.44 -54.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.289 kcal (2) G-P(sol) polarization free energy of solvation -59.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds