Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38563 * 119.72435 * 2 1 4 4 C 1.37819 * 120.21524 * 180.73863 * 3 2 1 5 5 C 1.40168 * 119.54057 * 0.56270 * 4 3 2 6 6 C 1.40296 * 119.86391 * 357.83038 * 5 4 3 7 7 C 1.37693 * 119.70420 * 2.51612 * 6 5 4 8 8 C 1.50549 * 119.82957 * 182.56622 * 6 5 4 9 9 C 1.52622 * 110.31768 * 323.49495 * 8 6 5 10 10 C 1.50455 * 110.74629 * 50.18512 * 9 8 6 11 11 C 1.38816 * 119.72487 * 144.36844 * 10 9 8 12 12 H 1.07999 * 120.00108 * 203.75367 * 11 10 9 13 13 C 1.40654 * 119.99906 * 23.48803 * 11 10 9 14 14 N 1.30538 * 119.99851 * 11.29746 * 13 11 10 15 15 Si 1.86801 * 120.00125 * 191.29973 * 13 11 10 16 16 H 1.48500 * 109.47036 * 89.99512 * 15 13 11 17 17 H 1.48496 * 109.47269 * 210.00023 * 15 13 11 18 18 H 1.48500 * 109.46986 * 329.99715 * 15 13 11 19 19 C 1.38179 * 120.55285 * 324.64254 * 10 9 8 20 20 H 1.09001 * 109.47275 * 89.99386 * 1 2 3 21 21 H 1.09001 * 109.47423 * 210.00113 * 1 2 3 22 22 H 1.09002 * 109.46967 * 330.00001 * 1 2 3 23 23 H 1.08000 * 119.89316 * 0.71984 * 3 2 1 24 24 H 1.07995 * 120.22932 * 180.54570 * 4 3 2 25 25 H 1.07999 * 119.96276 * 178.74176 * 7 6 5 26 26 H 1.09005 * 109.32369 * 203.23900 * 8 6 5 27 27 H 1.08995 * 109.19283 * 83.67285 * 8 6 5 28 28 H 1.08992 * 109.22499 * 289.85377 * 9 8 6 29 29 H 1.09003 * 109.18593 * 170.48607 * 9 8 6 30 30 H 0.97006 * 119.99453 * 180.02562 * 14 13 11 31 31 H 1.08002 * 120.33534 * 182.20029 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1939 1.2033 0.0000 4 6 3.5720 1.2152 -0.0154 5 6 4.2733 0.0018 -0.0429 6 6 3.5707 -1.2121 -0.0086 7 6 2.1938 -1.2035 -0.0005 8 6 4.3262 -2.5140 0.0202 9 6 5.5827 -2.4167 -0.8407 10 6 6.3747 -1.1864 -0.4905 11 6 7.7618 -1.2272 -0.5272 12 1 8.3384 -0.5295 0.0621 13 6 8.4164 -2.1807 -1.3276 14 7 7.7385 -2.8773 -2.1990 15 14 10.2556 -2.4505 -1.1435 16 1 10.5021 -3.5018 -0.1241 17 1 10.8257 -2.8801 -2.4456 18 1 10.9011 -1.1839 -0.7143 19 6 5.7331 -0.0178 -0.1271 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6478 2.1350 0.0118 24 1 4.1078 2.1528 -0.0065 25 1 1.6487 -2.1358 0.0053 26 1 3.6875 -3.3101 -0.3624 27 1 4.6095 -2.7412 1.0478 28 1 5.2955 -2.3717 -1.8911 29 1 6.1997 -3.2999 -0.6750 30 1 8.1900 -3.5352 -2.7508 31 1 6.3038 0.8733 0.0893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = 1.468769 kcal Electronic energy + Delta-G solvation = -13493.616411 eV Core-core repulsion = 11317.238771 eV Total energy + Delta-G solvation = -2176.377639 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.64277 -35.86425 -33.42571 -31.46088 -30.48283 -28.10468 -26.97917 -24.27279 -22.37530 -20.87020 -20.25844 -17.98773 -16.08209 -15.42936 -14.89114 -14.24658 -14.03419 -13.35504 -13.09939 -12.97871 -12.45760 -11.97309 -11.89831 -11.57374 -11.42098 -11.20017 -11.06632 -10.82036 -10.60242 -10.44170 -10.16498 -9.56078 -9.25434 -9.16520 -8.41878 -7.79355 -7.14166 -6.71916 -4.42666 2.17799 2.44295 2.86158 2.93327 2.97379 3.68438 3.73350 4.69312 5.25197 5.59386 5.66843 5.88820 5.96190 6.07023 6.10571 6.18951 6.32856 6.43381 6.58348 6.60266 6.69672 6.83187 6.92011 7.14738 7.16289 7.31982 7.44872 7.51989 7.59713 7.62051 7.90862 8.11723 8.23740 8.29853 8.82791 8.90118 9.84372 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.065546 B = 0.007205 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.080992 B = 3885.207316 C = 4175.882250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.176 4.176 3 C -0.102 4.102 4 C -0.180 4.180 5 C 0.054 3.946 6 C -0.141 4.141 7 C -0.095 4.095 8 C -0.070 4.070 9 C -0.063 4.063 10 C 0.116 3.884 11 C -0.430 4.430 12 H 0.084 0.916 13 C 0.068 3.932 14 N -0.776 5.776 15 Si 0.918 3.082 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.395 4.395 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.288 0.712 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -0.478 1.433 4.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.176 4.176 3 C -0.120 4.120 4 C -0.199 4.199 5 C 0.054 3.946 6 C -0.141 4.141 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.100 4.100 10 C 0.113 3.887 11 C -0.457 4.457 12 H 0.102 0.898 13 C -0.153 4.153 14 N -0.400 5.400 15 Si 0.742 3.258 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.416 4.416 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.895 -0.690 1.224 4.140 hybrid contribution 0.819 -0.055 -0.045 0.822 sum -3.075 -0.745 1.179 3.377 Atomic orbital electron populations 1.20533 0.92954 1.00995 1.00607 1.19425 0.94523 0.93272 1.10398 1.20618 0.94173 0.96096 1.01163 1.20959 0.93355 0.97064 1.08498 1.18855 0.94285 0.90999 0.90461 1.19880 0.92794 0.94967 1.06454 1.20523 0.93504 0.96207 1.01120 1.20333 0.96761 0.93702 0.99909 1.20273 0.93366 0.97793 0.98582 1.19244 0.92923 0.91036 0.85518 1.19635 0.92776 1.12462 1.20804 0.89797 1.26321 1.01954 0.93674 0.93387 1.69716 1.39064 1.16960 1.14220 0.86122 0.80805 0.80083 0.78792 1.18933 1.19940 1.18198 1.20972 0.89768 0.97686 1.33199 0.92955 0.92960 0.93003 0.88263 0.87749 0.88113 0.92829 0.92589 0.91538 0.91003 0.90107 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.00 36.00 0.36 -1.05 16 2 C -0.18 -3.38 5.90 -104.38 -0.62 -4.00 16 3 C -0.10 -2.02 9.67 -39.61 -0.38 -2.41 16 4 C -0.18 -3.98 9.85 -39.01 -0.38 -4.37 16 5 C 0.05 1.33 5.80 -105.19 -0.61 0.72 16 6 C -0.14 -3.22 5.67 -104.12 -0.59 -3.81 16 7 C -0.10 -1.95 9.32 -39.66 -0.37 -2.32 16 8 C -0.07 -1.52 5.92 -28.15 -0.17 -1.68 16 9 C -0.06 -1.52 4.26 -28.20 -0.12 -1.64 16 10 C 0.12 3.02 5.50 -104.55 -0.58 2.45 16 11 C -0.43 -10.94 8.94 -38.46 -0.34 -11.28 16 12 H 0.08 2.09 7.88 -52.49 -0.41 1.68 16 13 C 0.07 1.59 5.13 -17.19 -0.09 1.50 16 14 N -0.78 -18.46 10.68 55.59 0.59 -17.87 16 15 Si 0.92 17.44 29.58 -169.99 -5.03 12.41 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 19 C -0.40 -10.28 9.67 -36.39 -0.35 -10.63 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 22 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 24 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.68 7.95 -51.93 -0.41 1.27 16 29 H 0.07 1.73 6.65 -51.93 -0.35 1.38 16 30 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 31 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -26.32 260.72 -8.85 -35.17 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.10 Total: 4.86 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: -4.24 Total: -38.50 kcal Atomic # 7 Polarization: -18.46 SS G_CDS: 0.59 Total: -17.87 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.32 -8.85 -35.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.638 kcal (2) G-P(sol) polarization free energy of solvation -26.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds