Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38563 * 119.72435 * 2 1 4 4 C 1.37819 * 120.21524 * 180.73863 * 3 2 1 5 5 C 1.40168 * 119.54057 * 0.56270 * 4 3 2 6 6 C 1.40296 * 119.86391 * 357.83038 * 5 4 3 7 7 C 1.37693 * 119.70420 * 2.51612 * 6 5 4 8 8 C 1.50549 * 119.82957 * 182.56622 * 6 5 4 9 9 C 1.52622 * 110.31768 * 323.49495 * 8 6 5 10 10 C 1.50455 * 110.74629 * 50.18512 * 9 8 6 11 11 C 1.38816 * 119.72487 * 144.36844 * 10 9 8 12 12 H 1.07999 * 120.00108 * 203.75367 * 11 10 9 13 13 C 1.40654 * 119.99906 * 23.48803 * 11 10 9 14 14 N 1.30538 * 119.99851 * 11.29746 * 13 11 10 15 15 Si 1.86801 * 120.00125 * 191.29973 * 13 11 10 16 16 H 1.48500 * 109.47036 * 89.99512 * 15 13 11 17 17 H 1.48496 * 109.47269 * 210.00023 * 15 13 11 18 18 H 1.48500 * 109.46986 * 329.99715 * 15 13 11 19 19 C 1.38179 * 120.55285 * 324.64254 * 10 9 8 20 20 H 1.09001 * 109.47275 * 89.99386 * 1 2 3 21 21 H 1.09001 * 109.47423 * 210.00113 * 1 2 3 22 22 H 1.09002 * 109.46967 * 330.00001 * 1 2 3 23 23 H 1.08000 * 119.89316 * 0.71984 * 3 2 1 24 24 H 1.07995 * 120.22932 * 180.54570 * 4 3 2 25 25 H 1.07999 * 119.96276 * 178.74176 * 7 6 5 26 26 H 1.09005 * 109.32369 * 203.23900 * 8 6 5 27 27 H 1.08995 * 109.19283 * 83.67285 * 8 6 5 28 28 H 1.08992 * 109.22499 * 289.85377 * 9 8 6 29 29 H 1.09003 * 109.18593 * 170.48607 * 9 8 6 30 30 H 0.97006 * 119.99453 * 180.02562 * 14 13 11 31 31 H 1.08002 * 120.33534 * 182.20029 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1939 1.2033 0.0000 4 6 3.5720 1.2152 -0.0154 5 6 4.2733 0.0018 -0.0429 6 6 3.5707 -1.2121 -0.0086 7 6 2.1938 -1.2035 -0.0005 8 6 4.3262 -2.5140 0.0202 9 6 5.5827 -2.4167 -0.8407 10 6 6.3747 -1.1864 -0.4905 11 6 7.7618 -1.2272 -0.5272 12 1 8.3384 -0.5295 0.0621 13 6 8.4164 -2.1807 -1.3276 14 7 7.7385 -2.8773 -2.1990 15 14 10.2556 -2.4505 -1.1435 16 1 10.5021 -3.5018 -0.1241 17 1 10.8257 -2.8801 -2.4456 18 1 10.9011 -1.1839 -0.7143 19 6 5.7331 -0.0178 -0.1271 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6478 2.1350 0.0118 24 1 4.1078 2.1528 -0.0065 25 1 1.6487 -2.1358 0.0053 26 1 3.6875 -3.3101 -0.3624 27 1 4.6095 -2.7412 1.0478 28 1 5.2955 -2.3717 -1.8911 29 1 6.1997 -3.2999 -0.6750 30 1 8.1900 -3.5352 -2.7508 31 1 6.3038 0.8733 0.0893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -10.112492 kcal Electronic energy + Delta-G solvation = -13494.118612 eV Core-core repulsion = 11317.238771 eV Total energy + Delta-G solvation = -2176.879841 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34054 -37.63348 -35.15991 -33.13503 -32.19127 -29.85726 -28.59669 -25.95024 -24.15448 -22.57128 -21.96983 -19.74729 -17.95572 -17.14898 -16.55514 -15.84183 -15.75269 -15.06217 -14.74630 -14.30448 -14.15589 -13.60720 -13.45887 -13.17438 -12.98683 -12.77521 -12.71073 -12.51919 -12.29398 -12.03861 -11.83596 -11.28338 -11.07240 -10.97106 -10.19736 -9.45277 -8.91693 -8.53840 -6.35293 0.47269 0.76529 1.32053 1.36475 1.50023 1.94111 2.14105 2.91994 3.41685 4.04658 4.20631 4.30102 4.43500 4.53806 4.64110 4.68218 4.82975 4.91195 4.96169 4.99179 5.05415 5.11024 5.18386 5.30405 5.43936 5.50933 5.64193 5.77616 5.83720 5.95508 6.03584 6.32792 6.39365 6.51222 6.91688 7.00195 8.09808 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.065546 B = 0.007205 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.080992 B = 3885.207316 C = 4175.882250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.162 4.162 3 C -0.106 4.106 4 C -0.191 4.191 5 C 0.015 3.985 6 C -0.157 4.157 7 C -0.103 4.103 8 C -0.067 4.067 9 C -0.049 4.049 10 C 0.088 3.912 11 C -0.468 4.468 12 H 0.074 0.926 13 C 0.034 3.966 14 N -0.800 5.800 15 Si 0.992 3.008 16 H -0.255 1.255 17 H -0.260 1.260 18 H -0.262 1.262 19 C -0.424 4.424 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.134 0.866 24 H 0.107 0.893 25 H 0.130 0.870 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.300 0.700 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 -1.074 1.467 5.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.162 4.162 3 C -0.124 4.124 4 C -0.210 4.210 5 C 0.015 3.985 6 C -0.157 4.157 7 C -0.121 4.121 8 C -0.104 4.104 9 C -0.086 4.086 10 C 0.085 3.915 11 C -0.494 4.494 12 H 0.092 0.908 13 C -0.185 4.185 14 N -0.423 5.423 15 Si 0.811 3.189 16 H -0.179 1.179 17 H -0.184 1.184 18 H -0.186 1.186 19 C -0.445 4.445 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.151 0.849 24 H 0.125 0.875 25 H 0.148 0.852 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.658 -1.282 1.258 5.936 hybrid contribution 1.142 0.223 -0.052 1.165 sum -4.516 -1.059 1.206 4.792 Atomic orbital electron populations 1.20619 0.89240 1.02932 1.02194 1.20056 0.97229 0.92421 1.06537 1.21018 0.93193 0.98118 1.00092 1.21184 0.94855 0.96501 1.08414 1.19046 0.93687 0.92855 0.92927 1.20119 0.94208 0.94561 1.06803 1.20895 0.92537 0.98213 1.00437 1.20326 0.96061 0.94437 0.99570 1.20094 0.94147 0.96613 0.97723 1.19586 0.93770 0.91847 0.86298 1.19812 0.93018 1.14135 1.22478 0.90784 1.27115 1.06578 0.92588 0.92258 1.69731 1.41121 1.17112 1.14333 0.85043 0.74583 0.79837 0.79401 1.17889 1.18439 1.18594 1.21027 0.91205 0.97203 1.35044 0.91360 0.91230 0.91039 0.84857 0.87536 0.85198 0.90081 0.92495 0.93520 0.91640 0.88906 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.30 10.00 71.23 0.71 -1.59 16 2 C -0.16 -5.65 5.90 -19.71 -0.12 -5.77 16 3 C -0.11 -3.93 9.67 22.25 0.22 -3.72 16 4 C -0.19 -8.46 9.85 22.64 0.22 -8.24 16 5 C 0.02 0.76 5.80 -20.23 -0.12 0.64 16 6 C -0.16 -7.12 5.67 -19.54 -0.11 -7.23 16 7 C -0.10 -3.93 9.32 22.22 0.21 -3.73 16 8 C -0.07 -2.91 5.92 29.67 0.18 -2.74 16 9 C -0.05 -2.42 4.26 29.65 0.13 -2.29 16 10 C 0.09 4.85 5.50 -19.82 -0.11 4.74 16 11 C -0.47 -25.11 8.94 23.00 0.21 -24.90 16 12 H 0.07 3.95 7.88 -2.91 -0.02 3.92 16 13 C 0.03 1.62 5.13 85.48 0.44 2.06 16 14 N -0.80 -38.72 10.68 21.96 0.23 -38.48 16 15 Si 0.99 35.93 29.58 68.60 2.03 37.96 16 16 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 17 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 19 C -0.42 -23.46 9.67 24.34 0.24 -23.23 16 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 22 H 0.07 1.52 8.08 -2.39 -0.02 1.51 16 23 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 24 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 25 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 26 H 0.08 3.01 8.04 -2.38 -0.02 2.99 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.05 2.45 7.95 -2.39 -0.02 2.44 16 29 H 0.07 3.26 6.65 -2.39 -0.02 3.24 16 30 H 0.30 12.79 8.29 -92.70 -0.77 12.02 16 31 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -59.07 260.72 5.45 -53.62 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.10 Total: 22.90 kcal Atomic # 6 Polarization: -78.08 SS G_CDS: 2.09 Total: -75.99 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.23 Total: -38.48 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -59.07 5.45 -53.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.506 kcal (2) G-P(sol) polarization free energy of solvation -59.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds