Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47007 * 120.00137 * 2 1 3 5 5 C 1.53002 * 109.47001 * 67.12829 * 4 2 1 6 6 C 1.50698 * 108.71128 * 293.73644 * 5 4 2 7 7 H 1.08002 * 119.99898 * 356.73301 * 6 5 4 8 8 C 1.37875 * 120.00168 * 176.73908 * 6 5 4 9 9 N 1.31516 * 120.00145 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99880 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47312 * 119.99807 * 10 8 6 13 13 H 1.48507 * 109.46785 * 239.99469 * 10 8 6 14 14 C 1.52823 * 109.04847 * 175.05504 * 5 4 2 15 15 C 1.54261 * 112.66145 * 239.20254 * 14 5 4 16 16 S 1.83956 * 102.58357 * 335.48875 * 15 14 5 17 17 C 1.54258 * 108.87055 * 52.19720 * 5 4 2 18 18 H 1.09008 * 109.46878 * 168.45873 * 1 2 3 19 19 H 1.08998 * 109.47605 * 288.46001 * 1 2 3 20 20 H 1.09004 * 109.46854 * 48.46600 * 1 2 3 21 21 H 1.09007 * 109.47025 * 239.99841 * 2 1 3 22 22 H 1.09005 * 109.47600 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47435 * 300.00243 * 3 2 1 24 24 H 1.09007 * 109.47268 * 59.99990 * 3 2 1 25 25 H 1.08997 * 109.46851 * 307.12940 * 4 2 1 26 26 H 1.08997 * 109.46841 * 187.12703 * 4 2 1 27 27 H 0.97003 * 120.00117 * 180.02562 * 9 8 6 28 28 H 1.08999 * 108.81939 * 118.37497 * 14 5 4 29 29 H 1.08997 * 108.72792 * 359.97438 * 14 5 4 30 30 H 1.08999 * 110.78884 * 217.20828 * 15 14 5 31 31 H 1.09002 * 110.94897 * 93.83718 * 15 14 5 32 32 H 1.09004 * 110.78793 * 27.07613 * 17 5 4 33 33 H 1.09001 * 110.78709 * 263.80986 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6813 -2.2062 1.1629 6 6 0.1823 -2.3461 1.2280 7 1 -0.4357 -1.4724 1.3738 8 6 -0.4003 -3.5893 1.1016 9 7 0.3523 -4.6531 0.9238 10 14 -2.2585 -3.7625 1.1817 11 1 -2.8719 -2.4257 1.3863 12 1 -2.7564 -4.3467 -0.0895 13 1 -2.6243 -4.6529 2.3125 14 6 2.3007 -2.9389 2.3525 15 6 3.2711 -4.0579 1.9216 16 16 2.6710 -4.4813 0.2350 17 6 2.1758 -2.7611 -0.1888 18 1 -0.3633 -1.0070 -0.2056 19 1 -0.3634 0.3254 0.9747 20 1 -0.3633 0.6814 -0.7693 21 1 1.8933 -0.5139 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.5762 -0.2864 2.1346 26 1 3.1225 -0.6122 1.3153 27 1 -0.0576 -5.5277 0.8345 28 1 1.5015 -3.3764 2.9507 29 1 2.8433 -2.2177 2.9637 30 1 3.1912 -4.9170 2.5877 31 1 4.2972 -3.6918 1.8865 32 1 3.0310 -2.1907 -0.5516 33 1 1.3718 -2.7602 -0.9248 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = 4.128685 kcal Electronic energy + Delta-G solvation = -13583.600445 eV Core-core repulsion = 11542.782099 eV Total energy + Delta-G solvation = -2040.818346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.71079 -33.83798 -31.52157 -28.82271 -26.77703 -25.76888 -24.85182 -22.36046 -19.48397 -18.30727 -16.10918 -15.37520 -14.48274 -14.02958 -13.60466 -13.27174 -12.84182 -12.59258 -12.23349 -11.73219 -11.50449 -11.30984 -10.87184 -10.71448 -10.65679 -10.52845 -10.46178 -10.21528 -10.09373 -9.65822 -9.41962 -8.91523 -8.74959 -8.23439 -8.11958 -6.79758 -4.39596 -3.75561 3.36538 3.47178 3.48834 3.51666 3.91991 4.58564 5.45610 5.60465 5.68602 5.76386 6.04474 6.12051 6.23846 6.30403 6.38554 6.43986 6.48546 6.50947 6.62886 6.75532 6.81357 6.82810 6.92886 6.95743 7.19685 7.27188 7.45668 7.55523 7.83829 8.09276 8.51565 9.05846 9.75601 11.21716 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.017941 C = 0.011667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.320666 B = 1560.330769 C = 2399.400905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.092 4.092 5 C 0.069 3.931 6 C -0.538 4.538 7 H 0.075 0.925 8 C 0.067 3.933 9 N -0.811 5.811 10 Si 0.853 3.147 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.289 1.289 14 C -0.092 4.092 15 C -0.063 4.063 16 S -0.236 6.236 17 C -0.036 4.036 18 H 0.103 0.897 19 H 0.043 0.957 20 H 0.019 0.981 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.248 0.752 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 5.244 -0.264 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.130 4.130 5 C 0.067 3.933 6 C -0.576 4.576 7 H 0.093 0.907 8 C -0.140 4.140 9 N -0.447 5.447 10 Si 0.681 3.319 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.215 1.215 14 C -0.131 4.131 15 C -0.212 4.212 16 S -0.007 6.007 17 C -0.185 4.185 18 H 0.122 0.878 19 H 0.062 0.938 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.801 3.925 -0.922 5.541 hybrid contribution -1.163 0.907 0.773 1.665 sum 2.638 4.832 -0.148 5.507 Atomic orbital electron populations 1.22419 0.95109 1.04068 0.99108 1.21004 0.96712 0.93724 0.98990 1.21917 0.99973 0.97907 1.00589 1.21761 0.97257 0.97465 0.96562 1.18764 0.96735 0.89391 0.88407 1.21399 0.90035 0.93666 1.52464 0.90734 1.25602 0.95871 0.97491 0.95002 1.71883 1.29162 0.98297 1.45407 0.87145 0.89418 0.78002 0.77356 1.20211 1.21476 1.21545 1.22176 0.96676 0.94465 0.99832 1.23835 0.98828 1.01061 0.97475 1.86579 1.78337 1.19392 1.16418 1.24175 0.99853 0.92573 1.01862 0.87826 0.93831 0.96177 0.91791 0.93725 0.93750 0.93474 0.93213 0.94897 0.93924 0.90869 0.95256 0.90771 0.93008 0.94028 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.51 37.16 0.28 -2.56 16 2 C -0.09 -1.54 2.67 -90.62 -0.24 -1.78 16 3 C -0.15 -2.21 9.16 37.15 0.34 -1.87 16 4 C -0.09 -1.79 3.37 -26.73 -0.09 -1.88 16 5 C 0.07 1.53 0.53 -155.09 -0.08 1.45 16 6 C -0.54 -13.21 4.98 -34.44 -0.17 -13.38 16 7 H 0.07 1.83 4.69 -52.49 -0.25 1.59 16 8 C 0.07 1.72 4.85 -17.82 -0.09 1.64 16 9 N -0.81 -21.48 8.07 55.43 0.45 -21.03 16 10 Si 0.85 20.34 29.54 -169.99 -5.02 15.32 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C -0.09 -2.04 5.11 -26.16 -0.13 -2.18 16 15 C -0.06 -1.34 7.45 37.82 0.28 -1.05 16 16 S -0.24 -5.51 19.30 -107.50 -2.08 -7.58 16 17 C -0.04 -0.81 4.54 37.82 0.17 -0.63 16 18 H 0.10 2.24 5.31 -51.92 -0.28 1.96 16 19 H 0.04 0.83 7.34 -51.93 -0.38 0.45 16 20 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 21 H 0.06 1.19 6.35 -51.92 -0.33 0.86 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.05 0.98 8.05 -51.93 -0.42 0.57 16 26 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 29 H 0.03 0.59 7.52 -51.93 -0.39 0.19 16 30 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.86 7.30 -51.93 -0.38 0.48 16 33 H 0.08 2.01 7.75 -51.93 -0.40 1.61 16 LS Contribution 255.08 15.07 3.84 3.84 Total: -1.00 -25.56 255.08 -7.82 -33.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.28 Total: -1.67 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 0.27 Total: -22.26 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.45 Total: -21.03 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -2.08 Total: -7.58 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.56 -7.82 -33.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.510 kcal (2) G-P(sol) polarization free energy of solvation -25.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds