Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47007 * 120.00137 * 2 1 3 5 5 C 1.53002 * 109.47001 * 67.12829 * 4 2 1 6 6 C 1.50698 * 108.71128 * 293.73644 * 5 4 2 7 7 H 1.08002 * 119.99898 * 356.73301 * 6 5 4 8 8 C 1.37875 * 120.00168 * 176.73908 * 6 5 4 9 9 N 1.31516 * 120.00145 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99880 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47312 * 119.99807 * 10 8 6 13 13 H 1.48507 * 109.46785 * 239.99469 * 10 8 6 14 14 C 1.52823 * 109.04847 * 175.05504 * 5 4 2 15 15 C 1.54261 * 112.66145 * 239.20254 * 14 5 4 16 16 S 1.83956 * 102.58357 * 335.48875 * 15 14 5 17 17 C 1.54258 * 108.87055 * 52.19720 * 5 4 2 18 18 H 1.09008 * 109.46878 * 168.45873 * 1 2 3 19 19 H 1.08998 * 109.47605 * 288.46001 * 1 2 3 20 20 H 1.09004 * 109.46854 * 48.46600 * 1 2 3 21 21 H 1.09007 * 109.47025 * 239.99841 * 2 1 3 22 22 H 1.09005 * 109.47600 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47435 * 300.00243 * 3 2 1 24 24 H 1.09007 * 109.47268 * 59.99990 * 3 2 1 25 25 H 1.08997 * 109.46851 * 307.12940 * 4 2 1 26 26 H 1.08997 * 109.46841 * 187.12703 * 4 2 1 27 27 H 0.97003 * 120.00117 * 180.02562 * 9 8 6 28 28 H 1.08999 * 108.81939 * 118.37497 * 14 5 4 29 29 H 1.08997 * 108.72792 * 359.97438 * 14 5 4 30 30 H 1.08999 * 110.78884 * 217.20828 * 15 14 5 31 31 H 1.09002 * 110.94897 * 93.83718 * 15 14 5 32 32 H 1.09004 * 110.78793 * 27.07613 * 17 5 4 33 33 H 1.09001 * 110.78709 * 263.80986 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6813 -2.2062 1.1629 6 6 0.1823 -2.3461 1.2280 7 1 -0.4357 -1.4724 1.3738 8 6 -0.4003 -3.5893 1.1016 9 7 0.3523 -4.6531 0.9238 10 14 -2.2585 -3.7625 1.1817 11 1 -2.8719 -2.4257 1.3863 12 1 -2.7564 -4.3467 -0.0895 13 1 -2.6243 -4.6529 2.3125 14 6 2.3007 -2.9389 2.3525 15 6 3.2711 -4.0579 1.9216 16 16 2.6710 -4.4813 0.2350 17 6 2.1758 -2.7611 -0.1888 18 1 -0.3633 -1.0070 -0.2056 19 1 -0.3634 0.3254 0.9747 20 1 -0.3633 0.6814 -0.7693 21 1 1.8933 -0.5139 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.5762 -0.2864 2.1346 26 1 3.1225 -0.6122 1.3153 27 1 -0.0576 -5.5277 0.8345 28 1 1.5015 -3.3764 2.9507 29 1 2.8433 -2.2177 2.9637 30 1 3.1912 -4.9170 2.5877 31 1 4.2972 -3.6918 1.8865 32 1 3.0310 -2.1907 -0.5516 33 1 1.3718 -2.7602 -0.9248 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = -7.443559 kcal Electronic energy + Delta-G solvation = -13584.102255 eV Core-core repulsion = 11542.782099 eV Total energy + Delta-G solvation = -2041.320156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.37238 -35.41600 -33.42469 -30.48233 -28.32689 -27.45791 -26.54153 -24.08002 -21.05231 -20.01151 -17.96620 -17.09998 -16.39206 -15.70331 -15.22117 -14.85701 -14.46881 -14.33076 -13.79535 -13.33286 -13.08767 -12.92484 -12.75541 -12.47253 -12.28980 -12.25350 -12.14840 -11.99095 -11.74033 -11.19216 -11.01871 -10.61992 -10.56487 -10.20119 -9.89803 -8.69366 -6.32151 -5.70995 1.42499 1.51823 1.55467 1.72514 2.14864 2.61653 3.48529 4.16973 4.29957 4.34131 4.44433 4.45242 4.71461 4.76314 4.84364 4.97719 4.98522 5.03953 5.07745 5.12651 5.22021 5.27052 5.36159 5.44326 5.52214 5.73768 5.79929 5.93678 6.05921 6.12322 6.62379 7.10505 7.77039 9.20994 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.017941 C = 0.011667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.320666 B = 1560.330769 C = 2399.400905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.086 4.086 5 C 0.060 3.940 6 C -0.530 4.530 7 H 0.072 0.928 8 C 0.029 3.971 9 N -0.825 5.825 10 Si 0.895 3.105 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.297 1.297 14 C -0.091 4.091 15 C -0.050 4.050 16 S -0.282 6.282 17 C -0.021 4.021 18 H 0.071 0.929 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.237 0.763 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 6.922 -0.091 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.125 4.125 5 C 0.058 3.942 6 C -0.569 4.569 7 H 0.090 0.910 8 C -0.175 4.175 9 N -0.464 5.464 10 Si 0.724 3.276 11 H -0.200 1.200 12 H -0.224 1.224 13 H -0.224 1.224 14 C -0.130 4.130 15 C -0.199 4.199 16 S -0.054 6.054 17 C -0.169 4.169 18 H 0.090 0.910 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.845 5.616 -0.747 7.455 hybrid contribution -1.509 0.423 0.729 1.728 sum 3.336 6.040 -0.018 6.900 Atomic orbital electron populations 1.22264 0.96096 1.02474 0.99367 1.20983 0.95825 0.95687 0.97901 1.21832 1.00808 0.95560 1.01504 1.21687 0.98341 0.95298 0.97185 1.18853 0.95354 0.91586 0.88397 1.21657 0.91624 0.93073 1.50519 0.91016 1.26000 0.97757 0.97892 0.95847 1.72058 1.29394 0.97948 1.46977 0.86496 0.87277 0.77496 0.76330 1.20003 1.22426 1.22401 1.22084 0.96202 0.95142 0.99558 1.23864 0.99935 1.00747 0.95311 1.86724 1.78847 1.21107 1.18728 1.24055 0.99664 0.91876 1.01346 0.91020 0.94343 0.94306 0.92426 0.92378 0.92473 0.92991 0.93565 0.93159 0.95016 0.94020 0.92877 0.90726 0.90002 0.91973 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 7.51 71.98 0.54 -4.71 16 2 C -0.09 -2.85 2.67 -10.80 -0.03 -2.88 16 3 C -0.14 -3.69 9.16 71.98 0.66 -3.03 16 4 C -0.09 -3.14 3.37 30.60 0.10 -3.03 16 5 C 0.06 2.58 0.53 -52.56 -0.03 2.55 16 6 C -0.53 -25.89 4.98 25.60 0.13 -25.76 16 7 H 0.07 3.50 4.69 -2.91 -0.01 3.49 16 8 C 0.03 1.51 4.85 84.65 0.41 1.92 16 9 N -0.83 -44.29 8.07 21.45 0.17 -44.12 16 10 Si 0.90 42.46 29.54 68.60 2.03 44.49 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 14 C -0.09 -3.86 5.11 30.96 0.16 -3.70 16 15 C -0.05 -2.02 7.45 72.41 0.54 -1.48 16 16 S -0.28 -13.03 19.30 -56.49 -1.09 -14.12 16 17 C -0.02 -0.91 4.54 72.41 0.33 -0.58 16 18 H 0.07 3.06 5.31 -2.38 -0.01 3.05 16 19 H 0.04 1.40 7.34 -2.39 -0.02 1.38 16 20 H 0.04 1.23 8.10 -2.38 -0.02 1.21 16 21 H 0.06 2.00 6.35 -2.38 -0.02 1.99 16 22 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 26 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.24 12.90 8.31 -92.71 -0.77 12.13 16 28 H 0.04 2.01 7.12 -2.39 -0.02 2.00 16 29 H 0.05 1.98 7.52 -2.39 -0.02 1.96 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.06 2.44 7.30 -2.38 -0.02 2.43 16 33 H 0.06 2.83 7.75 -2.39 -0.02 2.81 16 Total: -1.00 -53.40 255.08 4.98 -48.42 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.07 Total: 6.05 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.81 Total: -40.71 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.17 Total: -44.12 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -13.03 SS G_CDS: -1.09 Total: -14.12 kcal Total: -53.40 4.98 -48.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.977 kcal (2) G-P(sol) polarization free energy of solvation -53.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds