Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 C 1.53003 * 109.46770 * 119.99743 * 2 1 3 5 5 C 1.52995 * 109.47299 * 67.82102 * 4 2 1 6 6 C 1.50700 * 108.73116 * 53.68633 * 5 4 2 7 7 H 1.08000 * 120.00123 * 264.32607 * 6 5 4 8 8 C 1.37881 * 120.00027 * 84.33010 * 6 5 4 9 9 N 1.31511 * 120.00183 * 165.67462 * 8 6 5 10 10 Si 1.86807 * 119.99557 * 345.67696 * 8 6 5 11 11 H 1.48499 * 109.47202 * 96.10589 * 10 8 6 12 12 H 1.48503 * 109.46470 * 216.10452 * 10 8 6 13 13 H 1.48495 * 109.47069 * 336.09744 * 10 8 6 14 14 C 1.52943 * 108.88992 * 172.19738 * 5 4 2 15 15 C 1.55156 * 108.81083 * 150.80284 * 14 5 4 16 16 S 1.83984 * 100.90880 * 318.65330 * 15 14 5 17 17 C 1.53287 * 108.71758 * 295.36567 * 5 4 2 18 18 H 1.08999 * 109.47112 * 286.04381 * 1 2 3 19 19 H 1.09002 * 109.46728 * 46.03629 * 1 2 3 20 20 H 1.09002 * 109.47402 * 166.03706 * 1 2 3 21 21 H 1.08999 * 109.47304 * 239.99097 * 2 1 3 22 22 H 1.08998 * 109.47287 * 179.97438 * 3 2 1 23 23 H 1.08995 * 109.46861 * 299.99827 * 3 2 1 24 24 H 1.09001 * 109.47322 * 59.99740 * 3 2 1 25 25 H 1.09000 * 109.47185 * 307.82284 * 4 2 1 26 26 H 1.09002 * 109.46990 * 187.82527 * 4 2 1 27 27 H 0.97001 * 119.99582 * 180.02562 * 9 8 6 28 28 H 1.08994 * 109.60338 * 30.96481 * 14 5 4 29 29 H 1.08996 * 109.60213 * 270.64372 * 14 5 4 30 30 H 1.09001 * 111.12820 * 76.56842 * 15 14 5 31 31 H 1.09002 * 111.12787 * 200.73865 * 15 14 5 32 32 H 1.08997 * 110.37545 * 117.49015 * 17 5 4 33 33 H 1.09006 * 110.45608 * 355.23683 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6965 -2.2092 1.1551 6 6 2.2261 -2.7464 -0.1495 7 1 1.5771 -2.8105 -1.0103 8 6 3.5392 -3.1562 -0.2440 9 7 3.9307 -3.8770 -1.2720 10 14 4.7620 -2.6877 1.0881 11 1 4.8805 -3.8000 2.0648 12 1 6.0880 -2.4258 0.4728 13 1 4.2898 -1.4646 1.7855 14 6 2.3775 -2.9484 2.3079 15 6 1.5231 -4.1887 2.6810 16 16 -0.1741 -3.4855 2.5801 17 6 0.1716 -2.3640 1.1709 18 1 -0.3633 0.2840 0.9876 19 1 -0.3633 0.7134 -0.7397 20 1 -0.3634 -0.9973 -0.2480 21 1 1.8934 -0.5140 -0.8899 22 1 3.1301 1.4425 0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.5669 -0.2945 2.1338 26 1 3.1209 -0.6017 1.3221 27 1 4.8544 -4.1656 -1.3383 28 1 2.4574 -2.2866 3.1703 29 1 3.3725 -3.2691 1.9997 30 1 1.6594 -4.9919 1.9569 31 1 1.7474 -4.5308 3.6913 32 1 -0.1743 -2.8097 0.2383 33 1 -0.3078 -1.3979 1.3291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = 15.638754 kcal Electronic energy + Delta-G solvation = -13593.689031 eV Core-core repulsion = 11553.369800 eV Total energy + Delta-G solvation = -2040.319232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.30317 -34.17374 -31.97671 -29.40302 -27.72348 -25.66207 -25.02565 -22.92571 -19.34244 -19.28058 -16.48897 -15.79697 -15.35423 -14.64872 -13.87515 -13.40729 -13.17538 -12.88961 -12.52834 -12.36483 -12.02303 -11.77853 -11.58115 -11.36590 -10.89506 -10.79018 -10.37487 -10.21126 -9.99332 -9.70181 -9.47029 -9.21704 -8.85800 -8.78020 -8.45291 -7.02906 -6.19231 -4.14681 2.69491 3.09903 3.16608 3.25503 3.35607 4.26300 5.06121 5.42353 5.52340 5.60901 5.65208 5.74282 5.87664 6.06880 6.08641 6.14224 6.19654 6.30044 6.37644 6.42802 6.48365 6.54776 6.56926 6.61513 6.67884 6.98535 7.11958 7.22635 7.34690 7.67143 8.38950 8.83376 9.43049 10.92164 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.019717 C = 0.012641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.628105 B = 1419.763830 C = 2214.499806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.111 4.111 5 C 0.038 3.962 6 C -0.506 4.506 7 H 0.078 0.922 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.245 1.245 14 C -0.123 4.123 15 C -0.044 4.044 16 S -0.366 6.366 17 C -0.041 4.041 18 H 0.046 0.954 19 H 0.040 0.960 20 H 0.071 0.929 21 H 0.094 0.906 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.264 0.736 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 5.511 5.143 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.150 4.150 5 C 0.036 3.964 6 C -0.543 4.543 7 H 0.096 0.904 8 C -0.131 4.131 9 N -0.525 5.525 10 Si 0.715 3.285 11 H -0.217 1.217 12 H -0.234 1.234 13 H -0.171 1.171 14 C -0.161 4.161 15 C -0.192 4.192 16 S -0.140 6.140 17 C -0.188 4.188 18 H 0.065 0.935 19 H 0.059 0.941 20 H 0.090 0.910 21 H 0.112 0.888 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.112 5.200 5.678 8.729 hybrid contribution 1.846 0.229 0.004 1.860 sum -2.267 5.429 5.682 8.180 Atomic orbital electron populations 1.22318 0.97035 1.01876 0.99866 1.21084 0.94479 0.94322 1.01092 1.21867 1.00634 0.97401 1.00275 1.22251 1.01072 0.96239 0.95398 1.18881 0.89611 0.92682 0.95210 1.20884 0.96595 1.41673 0.95193 0.90420 1.25098 0.98386 0.93976 0.95671 1.69936 1.17503 1.34082 1.30988 0.87172 0.79916 0.79691 0.81747 1.21732 1.23427 1.17113 1.22938 0.99329 0.95188 0.98677 1.24098 0.91069 1.00608 1.03446 1.87222 1.22119 1.55927 1.48707 1.24977 1.00269 0.98267 0.95250 0.93512 0.94121 0.91047 0.88757 0.93288 0.93600 0.93831 0.94684 0.91513 0.92587 0.92448 0.91641 0.89012 0.89514 0.89597 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 7.52 37.16 0.28 -2.19 16 2 C -0.09 -1.66 2.70 -90.62 -0.24 -1.90 16 3 C -0.14 -2.25 9.14 37.16 0.34 -1.91 16 4 C -0.11 -2.19 3.42 -26.73 -0.09 -2.29 16 5 C 0.04 0.82 0.45 -155.54 -0.07 0.75 16 6 C -0.51 -12.82 6.69 -34.44 -0.23 -13.05 16 7 H 0.08 2.16 7.70 -52.49 -0.40 1.76 16 8 C 0.07 1.90 5.32 -17.82 -0.09 1.80 16 9 N -0.89 -25.74 13.96 55.43 0.77 -24.96 16 10 Si 0.88 20.66 23.42 -169.99 -3.98 16.68 16 11 H -0.29 -6.69 6.79 56.52 0.38 -6.31 16 12 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.25 -5.31 4.40 56.52 0.25 -5.06 16 14 C -0.12 -2.61 3.81 -25.62 -0.10 -2.71 16 15 C -0.04 -0.87 7.52 38.30 0.29 -0.59 16 16 S -0.37 -7.20 23.22 -107.50 -2.50 -9.70 16 17 C -0.04 -0.81 4.57 37.31 0.17 -0.64 16 18 H 0.05 0.70 7.08 -51.93 -0.37 0.34 16 19 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 20 H 0.07 1.21 5.12 -51.93 -0.27 0.94 16 21 H 0.09 1.97 6.70 -51.93 -0.35 1.62 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.64 8.01 -51.93 -0.42 0.23 16 26 H 0.07 1.39 4.56 -51.93 -0.24 1.16 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.06 1.13 7.83 -51.93 -0.41 0.72 16 29 H 0.07 1.50 1.41 -51.93 -0.07 1.42 16 30 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.78 6.86 -51.93 -0.36 1.43 16 33 H 0.10 1.84 4.19 -51.93 -0.22 1.62 16 LS Contribution 246.59 15.07 3.72 3.72 Total: -1.00 -27.03 246.59 -6.67 -33.70 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.93 Total: 3.28 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 0.25 Total: -22.71 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.77 Total: -24.96 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -3.98 Total: 16.68 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -2.50 Total: -9.70 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.03 -6.67 -33.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.340 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds