Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 C 1.53003 * 109.46770 * 119.99743 * 2 1 3 5 5 C 1.52995 * 109.47299 * 67.82102 * 4 2 1 6 6 C 1.50700 * 108.73116 * 53.68633 * 5 4 2 7 7 H 1.08000 * 120.00123 * 264.32607 * 6 5 4 8 8 C 1.37881 * 120.00027 * 84.33010 * 6 5 4 9 9 N 1.31511 * 120.00183 * 165.67462 * 8 6 5 10 10 Si 1.86807 * 119.99557 * 345.67696 * 8 6 5 11 11 H 1.48499 * 109.47202 * 96.10589 * 10 8 6 12 12 H 1.48503 * 109.46470 * 216.10452 * 10 8 6 13 13 H 1.48495 * 109.47069 * 336.09744 * 10 8 6 14 14 C 1.52943 * 108.88992 * 172.19738 * 5 4 2 15 15 C 1.55156 * 108.81083 * 150.80284 * 14 5 4 16 16 S 1.83984 * 100.90880 * 318.65330 * 15 14 5 17 17 C 1.53287 * 108.71758 * 295.36567 * 5 4 2 18 18 H 1.08999 * 109.47112 * 286.04381 * 1 2 3 19 19 H 1.09002 * 109.46728 * 46.03629 * 1 2 3 20 20 H 1.09002 * 109.47402 * 166.03706 * 1 2 3 21 21 H 1.08999 * 109.47304 * 239.99097 * 2 1 3 22 22 H 1.08998 * 109.47287 * 179.97438 * 3 2 1 23 23 H 1.08995 * 109.46861 * 299.99827 * 3 2 1 24 24 H 1.09001 * 109.47322 * 59.99740 * 3 2 1 25 25 H 1.09000 * 109.47185 * 307.82284 * 4 2 1 26 26 H 1.09002 * 109.46990 * 187.82527 * 4 2 1 27 27 H 0.97001 * 119.99582 * 180.02562 * 9 8 6 28 28 H 1.08994 * 109.60338 * 30.96481 * 14 5 4 29 29 H 1.08996 * 109.60213 * 270.64372 * 14 5 4 30 30 H 1.09001 * 111.12820 * 76.56842 * 15 14 5 31 31 H 1.09002 * 111.12787 * 200.73865 * 15 14 5 32 32 H 1.08997 * 110.37545 * 117.49015 * 17 5 4 33 33 H 1.09006 * 110.45608 * 355.23683 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6965 -2.2092 1.1551 6 6 2.2261 -2.7464 -0.1495 7 1 1.5771 -2.8105 -1.0103 8 6 3.5392 -3.1562 -0.2440 9 7 3.9307 -3.8770 -1.2720 10 14 4.7620 -2.6877 1.0881 11 1 4.8805 -3.8000 2.0648 12 1 6.0880 -2.4258 0.4728 13 1 4.2898 -1.4646 1.7855 14 6 2.3775 -2.9484 2.3079 15 6 1.5231 -4.1887 2.6810 16 16 -0.1741 -3.4855 2.5801 17 6 0.1716 -2.3640 1.1709 18 1 -0.3633 0.2840 0.9876 19 1 -0.3633 0.7134 -0.7397 20 1 -0.3634 -0.9973 -0.2480 21 1 1.8934 -0.5140 -0.8899 22 1 3.1301 1.4425 0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.5669 -0.2945 2.1338 26 1 3.1209 -0.6017 1.3221 27 1 4.8544 -4.1656 -1.3383 28 1 2.4574 -2.2866 3.1703 29 1 3.3725 -3.2691 1.9997 30 1 1.6594 -4.9919 1.9569 31 1 1.7474 -4.5308 3.6913 32 1 -0.1743 -2.8097 0.2383 33 1 -0.3078 -1.3979 1.3291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = 0.257491 kcal Electronic energy + Delta-G solvation = -13594.356013 eV Core-core repulsion = 11553.369800 eV Total energy + Delta-G solvation = -2040.986213 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.93806 -35.69720 -33.97207 -30.95911 -29.25792 -27.03993 -26.92468 -24.54882 -21.10081 -20.77646 -18.25802 -17.64594 -17.02508 -16.15058 -15.52502 -15.05327 -14.73259 -14.63322 -14.19193 -13.87707 -13.58545 -13.28012 -12.97560 -12.90413 -12.52903 -12.33067 -12.14222 -11.81269 -11.55956 -11.32794 -11.02016 -10.94602 -10.59049 -10.51063 -10.34456 -8.60430 -8.26692 -6.24313 1.11298 1.26474 1.36579 1.45804 1.55783 2.30574 3.05883 3.82062 3.94132 4.14028 4.24452 4.27416 4.37825 4.53759 4.57736 4.65907 4.72625 4.88522 4.90520 4.98414 5.03958 5.08345 5.10078 5.17215 5.27723 5.46458 5.60709 5.67053 5.73786 5.89123 6.32807 6.75628 7.36107 8.88273 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.019717 C = 0.012641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.628105 B = 1419.763830 C = 2214.499806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.109 4.109 5 C 0.035 3.965 6 C -0.489 4.489 7 H 0.036 0.964 8 C 0.015 3.985 9 N -0.944 5.944 10 Si 0.933 3.067 11 H -0.282 1.282 12 H -0.320 1.320 13 H -0.210 1.210 14 C -0.130 4.130 15 C -0.047 4.047 16 S -0.354 6.354 17 C -0.038 4.038 18 H 0.065 0.935 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.261 0.739 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 7.327 7.625 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.147 4.147 5 C 0.033 3.967 6 C -0.528 4.528 7 H 0.054 0.946 8 C -0.182 4.182 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.211 1.211 12 H -0.251 1.251 13 H -0.134 1.134 14 C -0.168 4.168 15 C -0.195 4.195 16 S -0.128 6.128 17 C -0.185 4.185 18 H 0.084 0.916 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.855 7.032 8.181 11.830 hybrid contribution 1.955 -0.365 -0.850 2.163 sum -2.899 6.667 7.331 10.325 Atomic orbital electron populations 1.22248 0.95366 1.01620 1.01532 1.21018 0.95981 0.95565 0.98644 1.21814 1.00317 0.95617 1.01970 1.22192 1.00608 0.94728 0.97180 1.18927 0.90555 0.94085 0.93148 1.21040 0.95748 1.40105 0.95879 0.94589 1.25849 1.00390 0.94108 0.97837 1.70090 1.17712 1.36710 1.33878 0.86324 0.76770 0.80973 0.79419 1.21149 1.25093 1.13371 1.22977 0.98452 0.96141 0.99193 1.24141 0.90976 0.99604 1.04747 1.87186 1.22033 1.55782 1.47809 1.24905 0.99228 0.99504 0.94828 0.91576 0.92359 0.92588 0.92773 0.93841 0.92326 0.91737 0.92037 0.92592 0.92963 0.89810 0.93231 0.91037 0.86355 0.91615 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 7.52 71.98 0.54 -3.90 16 2 C -0.09 -3.22 2.70 -10.79 -0.03 -3.25 16 3 C -0.14 -3.93 9.14 71.98 0.66 -3.27 16 4 C -0.11 -3.98 3.42 30.59 0.10 -3.87 16 5 C 0.03 1.44 0.45 -52.85 -0.02 1.42 16 6 C -0.49 -25.41 6.69 25.60 0.17 -25.24 16 7 H 0.04 2.12 7.70 -2.91 -0.02 2.10 16 8 C 0.01 0.82 5.32 84.66 0.45 1.27 16 9 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 10 Si 0.93 42.47 23.42 68.60 1.61 44.08 16 11 H -0.28 -12.51 6.79 99.48 0.68 -11.83 16 12 H -0.32 -15.28 7.11 99.48 0.71 -14.58 16 13 H -0.21 -8.30 4.40 99.48 0.44 -7.86 16 14 C -0.13 -5.13 3.81 31.31 0.12 -5.01 16 15 C -0.05 -1.74 7.52 72.72 0.55 -1.19 16 16 S -0.35 -13.05 23.22 -56.49 -1.31 -14.36 16 17 C -0.04 -1.44 4.57 72.08 0.33 -1.11 16 18 H 0.07 1.71 7.08 -2.39 -0.02 1.69 16 19 H 0.06 1.51 8.07 -2.39 -0.02 1.49 16 20 H 0.06 1.82 5.12 -2.39 -0.01 1.81 16 21 H 0.05 2.29 6.70 -2.39 -0.02 2.28 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 26 H 0.06 2.16 4.56 -2.39 -0.01 2.15 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.08 2.89 7.83 -2.39 -0.02 2.88 16 29 H 0.05 2.16 1.41 -2.39 0.00 2.16 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.07 2.75 6.86 -2.39 -0.02 2.73 16 33 H 0.13 4.18 4.19 -2.38 -0.01 4.17 16 Total: -1.00 -59.39 246.59 4.25 -55.14 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.79 Total: 16.19 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 2.87 Total: -44.16 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.30 Total: -56.89 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.61 Total: 44.08 kcal Atomic # 16 Polarization: -13.05 SS G_CDS: -1.31 Total: -14.36 kcal Total: -59.39 4.25 -55.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.400 kcal (2) G-P(sol) polarization free energy of solvation -59.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds